View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_57 (Length: 282)
Name: NF20003_high_57
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 44 - 272
Target Start/End: Original strand, 38587680 - 38587907
Alignment:
| Q |
44 |
taagtgaccaaacaaatgcatataccaaatacctttctagcgtgattgctactataaatcataacttccaaatctgtccccttgttgcaactttgatgac |
143 |
Q |
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| T |
38587680 |
taagtgaccaaacaaatgcatataccaaatacctttctagcgcgattgctactataaatcataacttccaaatctgtccccttgttgcaattttgatgac |
38587779 |
T |
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| Q |
144 |
aattgccaaaccaactagcggtagctttctatgcaatggatcttagtaacaattccaatcggccaaagaaaccaaatacaaactcaaatacgaacaaatc |
243 |
Q |
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| T |
38587780 |
aattgccaaaccaactagc-atagctttctatgcaatggatcttagtaacaattccaattggccaaagaaacaaaatacaacctcaaatacgaacaaatc |
38587878 |
T |
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| Q |
244 |
aatgacggaaggcataaaattatttcttc |
272 |
Q |
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| T |
38587879 |
aatgacggaaggcataaaattatttcttc |
38587907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38584860 - 38584905
Alignment:
| Q |
1 |
gtcgtatcaacaaaatcccaaactcattactacgtactattattaa |
46 |
Q |
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| T |
38584860 |
gtcgtatcaacaaaatctcaaactcattactacgtactattattaa |
38584905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 21813087 - 21812829
Alignment:
| Q |
10 |
acaaaatcccaaactcattactacgtactattattaagtgaccaaacaaatgcatataccaaatacctttctagcgtgattgctactataaatcataact |
109 |
Q |
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||||||| |||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
21813087 |
acaaaattccaaactcattactac----tattctcatgtgaccaaacaaatgcatataccaaatacctttctaacgtgattgctattataaatcataact |
21812992 |
T |
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| Q |
110 |
tccaaatctgtccccttgttgcaactttgatgacaattgccaaaccaactagcggtagctttctatgcaatggatcttagt-aacaattccaatcggcca |
208 |
Q |
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||||||| ||||||||| |||||| ||||||||||| |||||||| |||||| |||| |||||| | ||||||||||||| |||||||||||| ||||| |
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| T |
21812991 |
tccaaatatgtccccttattgcaattttgatgacaaatgccaaactaactagatgtagatttctacgtaatggatcttagtaaacaattccaattggcca |
21812892 |
T |
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| Q |
209 |
aagaaaccaaatacaaactcaaatacgaacaaatcaatgacggaaggcataaaattatttcttc |
272 |
Q |
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|| | ||||||||| |||||| ||||| || |||||||||||||| |||||| ||||||| |
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| T |
21812891 |
aa-taggcaaatacaacctcaaacacgaatggattaatgacggaaggcacaaaattctttcttc |
21812829 |
T |
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