View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_59 (Length: 275)
Name: NF20003_high_59
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_59 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 8044210 - 8043953
Alignment:
| Q |
18 |
aggacttaaatgcaaccaagaaaatttgatttacttctataactaagttattctagaattactaggtagaaaaattaaaatgctatgaatgaattataat |
117 |
Q |
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| T |
8044210 |
aggacttaaatgcaaccaagaaaatttgatttacttctataactaagttattctagaattactaggtagaaaaattaaaatgctatgaatgaattataat |
8044111 |
T |
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| Q |
118 |
gaaagttaattagtaagaattaccaacctgtatatcattttgctgtttacgtccttctccatgcctcctctcaggaatatcaatactgcaatcaatatct |
217 |
Q |
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| T |
8044110 |
gaaagttaattagtaagaattaccaacctgtatatcattttgctgtttacgtccttctccatgcctcctctcaggaatatcaatactgcaatcaatatct |
8044011 |
T |
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| Q |
218 |
tcaataaccaaaatagacctattagcagtagcaagaagcaactttctaagatcagaat |
275 |
Q |
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| T |
8044010 |
tcaataaccaaaatagacctattagcagtagcaagaagcaactttctaagatcagaat |
8043953 |
T |
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