View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_6 (Length: 664)
Name: NF20003_high_6
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 652
Target Start/End: Original strand, 24614791 - 24615416
Alignment:
| Q |
19 |
atacaatttcaattataaacgaaggtccaagtgagaattaatcaaattcaaacatcatacgttatctacatgcaatgcatcttgctaattgcagtcataa |
118 |
Q |
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| T |
24614791 |
atacaatttcaattataaacgaaggtccaagtgagaattaatcaaattcaaacatcatacgttatctacatgcaatgcttcttgctaattgcagtcataa |
24614890 |
T |
|
| Q |
119 |
tgttttcgtattttttggtataacattttcccttgcaaaatggtaaatg-tcatgctaacaagta-------tcataaaaacactaattaaagaattnnn |
210 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||| |
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| T |
24614891 |
tgttttcgtattttttggtataactttttcccttgcaaaatggtaaatggtcatgctaacaagtaacaagtatcataagaacattaattaaagaattaaa |
24614990 |
T |
|
| Q |
211 |
nnnngtaaacaattgtcaaattttatgccgaaataattactttttgatagtagttcagtaagttaaatacacaatttacgagataaaatttctattttaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614991 |
aaaagtaaacaattgtcaaattttatgccgaaataattactttttggtagtatttcagtaagttaaatacacaatttacgagataaaatttctattttaa |
24615090 |
T |
|
| Q |
311 |
nnnnnnnnnaacaaatgtcacaaagagacactgattaacatttctcaaattataattaggatacatttattattttcaaaacttccgaattaaattcaat |
410 |
Q |
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| T |
24615091 |
tttttttt-aacaaatgtctcaaagagatactgattaacattttccaaattataattaggatacacttattattttcaaaacttccgaatcaaat----- |
24615184 |
T |
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| Q |
411 |
atgaattaaattcaatatgaagtttacgacattaacattctgcgtaccaaccacttgcgttatactttgatataagatttcacaacctttactcaattac |
510 |
Q |
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| T |
24615185 |
-----------tcaatatggagtttacgacattaacattctgcgtaccaaccacttgcgttatactttgatataagatttcacaccctttactcaattac |
24615273 |
T |
|
| Q |
511 |
aatattcatactcccgtatttctataaattatacatg-tttcatatacaattttgtacagcataatatgtcagaaaatatacatcacaaaatatatgctt |
609 |
Q |
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||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24615274 |
aatattcatactcccgtatttctataaattatacatgcttgcacatacaattttgtacagcataatatgtcagaaaatatacatcacaaaatatatactt |
24615373 |
T |
|
| Q |
610 |
tttatggatgaatgtatacatttttgtagtcatgtcggtgatg |
652 |
Q |
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| T |
24615374 |
tttatggatgaatgtatacatttttgtagtcatgtcggtgatg |
24615416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 6622311 - 6622271
Alignment:
| Q |
270 |
aagttaaatacacaatttacgagataaaatttctattttaa |
310 |
Q |
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| T |
6622311 |
aagttaaatacacaattttcaaaataaaatttctattttaa |
6622271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 42035781 - 42035745
Alignment:
| Q |
272 |
gttaaatacacaatttacgagataaaatttctatttt |
308 |
Q |
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|||||||||||||||| | |||||||||||||||||| |
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| T |
42035781 |
gttaaatacacaattttcaagataaaatttctatttt |
42035745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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