View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_60 (Length: 272)
Name: NF20003_high_60
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_60 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (3 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 7346 - 7092
Alignment:
| Q |
18 |
aataaagctttgttcgggatgtccaaaataatgctcattatggtacttcactttctatac-----------atccatgtattttgggccatatagcaaca |
106 |
Q |
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| T |
7346 |
aataaagctttgttcgggaagtccaaaataatgctcattatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaaca |
7247 |
T |
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| Q |
107 |
tcttttggcagctatagtttgagttgctaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcctgaaaaacaccgtaaatac |
206 |
Q |
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| T |
7246 |
tcttttggcagctatagtttgagttgcaaagagagaaaaggaagatccatattgatgtcaaaaaaattccaaatagtttcccaaaacacaccgtaaatac |
7147 |
T |
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| Q |
207 |
taagcttattagaaccaaacacattgcataaaactcaaacttcttttgtttctct |
261 |
Q |
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| T |
7146 |
taagcttatgagaaccaaccacattgcataaaactcaaacttcttttgcttctct |
7092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 60677 - 60435
Alignment:
| Q |
19 |
ataaagctttgttcgggatgtccaaaataatgctcattatggtacttcactttctatacatccatgtattttgggccatatagcaacatcttttggcagc |
118 |
Q |
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| T |
60677 |
ataaagctttgttcgggaagtccaaaataatgctcattatggtacttcactttctatacatccatgtattttgcgccatatagcaacatcttttggcaga |
60578 |
T |
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| Q |
119 |
tatagtttgagttgctaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcctgaaaaacaccgtaaatactaagcttattag |
218 |
Q |
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| T |
60577 |
tatagtttgagttccaaagagagaaaaggaagatccatatcgatgtcaaaaaaataccaaatattttcccaaaaaacacagtaaatactaagcttatgag |
60478 |
T |
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| Q |
219 |
aaccaaacacattgcataaaactcaaacttcttttgtttctct |
261 |
Q |
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| T |
60477 |
taccaaagaaattgcataaaactcaaaattcttttgcttctct |
60435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 85236 - 85403
Alignment:
| Q |
94 |
ccatatagcaacatcttttggcagctatagtttgagttgctaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcctgaaaa |
193 |
Q |
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| T |
85236 |
ccatatggcaacatctttcggcacctatagtttgagttgcaaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcccgaaaa |
85335 |
T |
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| Q |
194 |
acaccgtaaatactaagcttattagaaccaaacacattgcataaaactcaaacttcttttgtttctct |
261 |
Q |
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| T |
85336 |
acacagtaaatactaagcttattagaaccaaacaaattgcacgaaactcaaacttcttttgtttctct |
85403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 261
Target Start/End: Complemental strand, 48064 - 47831
Alignment:
| Q |
39 |
tccaaaataatgctcattatggtacttcactttctatac-----------atccatgtattttgggccatatagcaacatcttttggcagctatagtttg |
127 |
Q |
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| T |
48064 |
tccaaaataatcctcgttatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcatctatagtttg |
47965 |
T |
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| Q |
128 |
agttgctaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcctgaaaaacaccgtaaatactaagcttattagaaccaaaca |
227 |
Q |
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| T |
47964 |
agttccaaagagagaaaaggaagatcgaaattgaagtaaaaaatattccaaatagtttcccaaaaaacaccataaatactaatcttatgagaaccaaaca |
47865 |
T |
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| Q |
228 |
cattgcataaaactcaaacttcttttgtttctct |
261 |
Q |
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| T |
47864 |
aattgcatgaaactcaaacttcttttatttctct |
47831 |
T |
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