View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_61 (Length: 271)
Name: NF20003_high_61
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 6711369 - 6711629
Alignment:
| Q |
1 |
ttttgaccctgcagaggtaatttctattttctaacaactcacttgtatttaaatatcacttgacgaacactatacagctcctgaagaattttgcaaaata |
100 |
Q |
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| T |
6711369 |
ttttgaccctgcagaggtaatttctattttctaacaactcacttgtatttaaatatcacttgacaaacactatacagctcctgaagaattttgcaaaata |
6711468 |
T |
|
| Q |
101 |
gatgcannnnnnnatgctaccaatccacctgctgtttaacaatccaaaagttcttctcttggtaggatattccactcctaaataagtcaagaggatttct |
200 |
Q |
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| T |
6711469 |
gatgcatttttttatgctaccaatccacctgctgtttaacaatccaaaagttcttctcttggtaggatattccactactaaataagtcaagaggatttct |
6711568 |
T |
|
| Q |
201 |
ttgaacatatcttgtgatttctgaatatgtccattaattttgatttgtgatgctacctttg |
261 |
Q |
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| T |
6711569 |
ttgaacatatcttgtgatttctgaatatgtccattaattttgatttgtgatgctatctttg |
6711629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 20665837 - 20665892
Alignment:
| Q |
199 |
ctttgaacatatcttgtgatttctgaatatgtccattaattttgatttgtgatgcta |
255 |
Q |
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| T |
20665837 |
ctttgaacatatcttgtgattt-ttaatttgtccatcaattttgaattgtgatgcta |
20665892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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