View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_high_62 (Length: 270)

Name: NF20003_high_62
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_high_62
NF20003_high_62
[»] chr2 (3 HSPs)
chr2 (15-270)||(44957208-44957464)
chr2 (35-270)||(14104658-14104894)
chr2 (17-236)||(13060140-13060362)
[»] chr6 (11 HSPs)
chr6 (15-270)||(35129696-35129953)
chr6 (35-255)||(14775666-14775887)
chr6 (15-270)||(32814839-32815090)
chr6 (42-254)||(29610727-29610927)
chr6 (164-270)||(14041758-14041863)
chr6 (107-224)||(5495915-5496032)
chr6 (40-100)||(14041890-14041950)
chr6 (15-100)||(5496018-5496103)
chr6 (67-134)||(15991563-15991631)
chr6 (67-134)||(15999225-15999293)
chr6 (157-193)||(17964472-17964508)
[»] chr1 (17 HSPs)
chr1 (16-253)||(25661594-25661833)
chr1 (35-270)||(36724776-36725012)
chr1 (35-255)||(12906236-12906457)
chr1 (35-270)||(31064024-31064259)
chr1 (15-270)||(28857831-28858090)
chr1 (15-270)||(23192993-23193250)
chr1 (35-270)||(27761631-27761866)
chr1 (15-255)||(2493590-2493830)
chr1 (15-253)||(32987325-32987566)
chr1 (72-270)||(33380747-33380948)
chr1 (151-270)||(24159707-24159826)
chr1 (35-142)||(24159613-24159720)
chr1 (117-250)||(19309436-19309568)
chr1 (15-108)||(9328213-9328307)
chr1 (15-72)||(19309376-19309434)
chr1 (150-241)||(25654598-25654691)
chr1 (52-101)||(25779065-25779114)
[»] chr4 (13 HSPs)
chr4 (15-267)||(33722692-33722944)
chr4 (15-255)||(15020237-15020478)
chr4 (35-270)||(20513174-20513410)
chr4 (35-254)||(55081494-55081714)
chr4 (107-219)||(16595804-16595916)
chr4 (16-132)||(2575072-2575189)
chr4 (159-239)||(2575172-2575252)
chr4 (15-101)||(40684648-40684735)
chr4 (144-255)||(40684733-40684844)
chr4 (93-164)||(2574378-2574450)
chr4 (151-195)||(39991786-39991830)
chr4 (49-103)||(16954601-16954655)
chr4 (157-193)||(5271332-5271368)
[»] chr3 (9 HSPs)
chr3 (15-270)||(48435600-48435855)
chr3 (19-224)||(48432075-48432282)
chr3 (123-270)||(16983062-16983209)
chr3 (105-270)||(12156343-12156508)
chr3 (24-225)||(28243302-28243504)
chr3 (35-190)||(4662305-4662469)
chr3 (132-194)||(29067921-29067983)
chr3 (15-94)||(16983258-16983341)
chr3 (218-270)||(48432476-48432528)
[»] chr5 (6 HSPs)
chr5 (36-268)||(1286058-1286291)
chr5 (35-270)||(18265296-18265532)
chr5 (35-148)||(25215031-25215148)
chr5 (35-148)||(25279182-25279299)
chr5 (35-100)||(25184668-25184733)
chr5 (157-193)||(36423783-36423819)
[»] chr8 (13 HSPs)
chr8 (35-270)||(19954340-19954576)
chr8 (35-270)||(2470042-2470278)
chr8 (14-251)||(30778954-30779193)
chr8 (35-254)||(19949902-19950122)
chr8 (15-250)||(7145903-7146141)
chr8 (35-169)||(4544084-4544219)
chr8 (44-270)||(34517308-34517534)
chr8 (107-229)||(27236201-27236325)
chr8 (15-97)||(27236128-27236212)
chr8 (156-270)||(28237860-28237972)
chr8 (127-188)||(38182120-38182181)
chr8 (213-270)||(4544221-4544278)
chr8 (15-96)||(21416524-21416606)
[»] chr7 (11 HSPs)
chr7 (35-270)||(25832154-25832390)
chr7 (108-251)||(29478020-29478163)
chr7 (151-270)||(6898265-6898383)
chr7 (15-125)||(6898169-6898283)
chr7 (126-270)||(23616265-23616409)
chr7 (75-142)||(23616235-23616303)
chr7 (79-192)||(20130168-20130282)
chr7 (17-70)||(4333541-4333595)
chr7 (17-70)||(4337788-4337842)
chr7 (126-187)||(1289214-1289275)
chr7 (49-101)||(45748413-45748465)
[»] scaffold0018 (1 HSPs)
scaffold0018 (35-270)||(171510-171742)
[»] scaffold0346 (1 HSPs)
scaffold0346 (17-70)||(12472-12526)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 44957208 - 44957464
Alignment:
Q  15 gatcttaataatatagtcccttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  44957208 gatcttaataatatagtcccttttatgttttatgcccttggagaaattagaggttagagtggtggaaacaccatattagagtggtcatagtaccatataa 44957307  T
Q  114 gagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  44957308 gagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctagaacagattatatagtgca 44957407  T
Q  214 ataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  44957408 ataggactctgatacagttgtagcaggactgttttatcctggagatgtcgtggttga 44957464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 14104894 - 14104658
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||| ||| ||||| || ||| ||||||||||||| ||||||||||||    
T  14104894 ttttatgttttatgcccttggaggaattagatgttagagtggtggagacaccatataagactggtcctagtaccatataagagtggttttagtaccataa 14104795  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    ||||||||||| |||  |||||| |||||||||||| |||||||| |||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  14104794 tagagtggtatgaataccatattggagtggtcttagaaccatattggaaggtgtatttctagaacatatcctatagtgcaataggactctgatacagttg 14104695  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||||| |||| ||||||| ||| || |||||||||||    
T  14104694 tagctaggctgttttatcatggggacgtcgtggttga 14104658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 13060140 - 13060362
Alignment:
Q  17 tcttaataatatagtcccttt-tatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-catataag 114  Q
    |||||||||||||||| |||| ||| ||||||||| |||||||| | ||| ||||||  ||| |||| ||||||||||||||||||  ||| ||| | |     
T  13060140 tcttaataatatagtctctttctatattttatgcctttggagaagtaagatgttagaatggtagaaataccatattagagtggtcacgataccatgttat 13060239  T
Q  115 agtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtg-tatttctaggacatattatatagtgca 213  Q
    || ||| || |||||||| ||||||||||  ||| |||||||  ||||||||||| |||||||||||| ||| |||| |||| ||  ||  || | ||||    
T  13060240 agaggtcttggtaccatagtagagtggtaaaaatatcatattgcagtggtcttagtaccatatttgaatgtgttattactagaacggatcctacaatgca 13060339  T
Q  214 ataggactctgatacagttgtag 236  Q
     ||||||||||||||||||||||    
T  13060340 gtaggactctgatacagttgtag 13060362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 35129953 - 35129696
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atata 112  Q
    |||||||| ||||||  ||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||| |||||    
T  35129953 gatcttaagaatataacccctttttatgttatatgcccttggagaagttagaggttagagtggtggaaacaccatattagagtggtcttagtaccatata 35129854  T
Q  113 agagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgc 212  Q
    ||| | || |||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||  ||||||||    
T  35129853 agaatagtcttagtaccataatagagtggtatcaataccatattagaatggtcttagcaccatatttgaaggtgtatttctagaacagatcctatagtgc 35129754  T
Q  213 aataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    || ||||||||||||||||||||||||| || ||||||||||  ||||||||||||||    
T  35129753 aaaaggactctgatacagttgtagctggactgttttatcctgatgatgtcgtggttga 35129696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 14775887 - 14775666
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||    
T  14775887 ttttatcttttatgcccttggagaagttagaggttagagtggtggaaacaccatattagagtggtcctagtaccatataagagtggtcttagtaccataa 14775788  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||||||||||  |||||| ||||||| |||||||||||||| ||||||| ||||||| ||| ||  ||||||||||||||||| ||||||||| |    
T  14775787 tagagtggtatcaataccatattggagtggttttagcaccatatttaaaggtgtctttctagaacagatcctatagtgcaataggactttgatacagtgg 14775688  T
Q  234 tagctgggctattttatcctgg 255  Q
    |||||| ||| |||||||||||    
T  14775687 tagctgagctgttttatcctgg 14775666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 32814839 - 32815090
Alignment:
Q  15 gatcttaataatatagtcccttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataa 113  Q
    |||||||| ||||||||||||     |||||||||||||| |||| |||||| |||||| |||||||||||||||||||||| ||| || ||| ||||||    
T  32814839 gatcttaagaatatagtccct-----gttttatgcccttgtagaagttagagattagagtggtggaaacaccatattagagtagtcttagtaccatataa 32814933  T
Q  114 gagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgca 213  Q
    || |||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||    
T  32814934 gaatggtcttagtaccataatagagtggtatcaataccatattatagtggtcttagcaccatatttgaaggtgtatttctagaacagatcctatagtgca 32815033  T
Q  214 ataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||| ||| ||||||| ||||||||||||| |||||| |||| | ||||||||||||    
T  32815034 atagaactttgatacatttgtagctgggctgttttatactgggggtgtcgtggttga 32815090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 29610727 - 29610927
Alignment:
Q  42 ttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataatagagtg 140  Q
    ||||||||||||| | || ||||||||| ||| |||||||||| |||||| |||||||| || ||| ||||||||||| | |||||||||||||||||||    
T  29610727 ttttatgcccttgaaaaagttagaggttcgagtggtggaaacatcatattggagtggtcctagtaccatataagagtgattttagtaccataatagagtg 29610826  T
Q  141 gtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgg 240  Q
    ||||||||||||||||||||||             |||||||||||||||||||  ||  ||  || |||||| |||||||| || ||| | ||||||||    
T  29610827 gtatcaatgtcatattagagtg-------------atttgaaggtgtatttctataacggatcctacagtgcagtaggactccgaaacaatcgtagctgg 29610913  T
Q  241 gctattttatcctg 254  Q
    ||||||||||||||    
T  29610914 gctattttatcctg 29610927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 14041863 - 14041758
Alignment:
Q  164 tcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgggctattttatcctggagatgtcg 263  Q
    |||||||||||||||| ||||||||||||||| ||| ||  ||||||||||||||||| ||||||||||||| ||| ||| ||||||| |||||  ||||    
T  14041863 tcttagcaccatatttcaaggtgtatttctagaacagatcctatagtgcaataggactttgatacagttgtaactgagctgttttatcttggag-cgtcg 14041765  T
Q  264 tggttga 270  Q
    |||||||    
T  14041764 tggttga 14041758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 5496032 - 5495915
Alignment:
Q  107 catataagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattata 206  Q
    ||||| |||||||| | | ||||||||||||||||||  |||  |||||| |||| |||||| |||||||||| ||||| ||||||||  ||| ||| ||    
T  5496032 catattagagtggtctcattaccataatagagtggtagaaataccatattggagttgtcttaacaccatatttaaaggtatatttctataacagattcta 5495933  T
Q  207 tagtgcaataggactctg 224  Q
    |||||||||| |||||||    
T  5495932 tagtgcaataagactctg 5495915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 14041950 - 14041890
Alignment:
Q  40 tgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtc 100  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||||    
T  14041950 tgttttatgcccttggagaagttagaggttagagtggtgaaaacaccatattcgagtggtc 14041890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 5496103 - 5496018
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtc 100  Q
    |||||||| ||||||||| ||||| || |||||||||||||||||| | | |||||| |  ||||| ||||||||||||||||||||    
T  5496103 gatcttaagaatatagtctctttttatattttatgcccttggagaagtaaaaggttacaatggtgg-aacaccatattagagtggtc 5496018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 15991563 - 15991631
Alignment:
Q  67 gttagagaggtggaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataat 134  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||  ||||||||  ||||||||||||    
T  15991563 gttagagtggtggtaacaccatatttgaatggtcataataccatagtagagtggtcatagtaccataat 15991631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 15999225 - 15999293
Alignment:
Q  67 gttagagaggtggaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataat 134  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||  ||||||||  ||||||||||||    
T  15999225 gttagagtggtggtaacaccatatttgaatggtcataataccatagtagagtggtcatagtaccataat 15999293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 17964472 - 17964508
Alignment:
Q  157 agagtggtcttagcaccatatttgaaggtgtatttct 193  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  17964472 agagtggtcttagtaccatatttgaaggtgtaattct 17964508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 25661594 - 25661833
Alignment:
Q  16 atcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataa 113  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| || ||| ||||||    
T  25661594 atcttaagaatatagtccctttttatgttttatgcccttggagaagttagaggttggagtggtggaaacaccatattagagtggtcctagtaccatataa 25661693  T
Q  114 gagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgca 213  Q
    ||||||| |||||||||||||| ||||||||  ||  |||||| ||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||    
T  25661694 gagtggtcttagtaccataataaagtggtatatataccatattggagtggtcttagccccatatttgaaggtgtatttctagaacatatcctatagtgca 25661793  T
Q  214 ataggactctgatacagttgtagctgggctattttatcct 253  Q
    |||||||||||||||| ||||||||| ||| |||||||||    
T  25661794 ataggactctgatacaattgtagctgagctgttttatcct 25661833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 36725012 - 36724776
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||||| || ||| |||||||| |||| ||||| ||||||    
T  36725012 ttttatgttttatgccctgggagaagttagaggttagagtggtggaaacaccatattaaagtggtcttagtaccatataagaatggtcttagtgccataa 36724913  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||     
T  36724912 tagagtggtatcaataccatattagagtggtcttagcaccatatttgaaggtgtatttctagaacatatcctataatgcaataggactttgatacaatta 36724813  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||||||| ||||||| ||| |  |||||||||||    
T  36724812 tagctgggctgttttatcttgggggcgtcgtggttga 36724776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 12906457 - 12906236
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||| ||||| ||| ||||||||||||| ||| |||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||    
T  12906457 ttttatgttttatgctcttggtgaagttagaggttagagtggtcgaaacaccatattagagtggtcttaataccatataagaatggtcttagtaccataa 12906358  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    || ||||||||||||  |||||||||||||||||||||||||||||||||||||| || ||| ||||||  ||| ||||||||||||||||||||| |||    
T  12906357 taaagtggtatcaataccatattagagtggtcttagcaccatatttgaaggtgtacttttagaacatatcctattgtgcaataggactctgatacaattg 12906258  T
Q  234 tagctgggctattttatcctgg 255  Q
    || || |||| |||||||||||    
T  12906257 taacttggctgttttatcctgg 12906236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 31064259 - 31064024
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| || ||| ||||||||||||| ||||||||||||    
T  31064259 ttttatgttttatgcccttggagaaattagaggttagagtgatggaaacaccatattagaatggtcctagtaccatataagagtggtcttagtaccataa 31064160  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    ||||||| ||||||||  |||||||| |||||||||||||||||||  | ||||||||| || ||| ||  |||||||||||| |||||||||| |||||    
T  31064159 tagagtgctatcaatgcaatattagaatggtcttagcaccatattttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttg 31064060  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    | |||||||| ||||||||||| || |||||||||||    
T  31064059 ttgctgggctgttttatcctgg-gacgtcgtggttga 31064024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 28857831 - 28858090
Alignment:
Q  15 gatcttaataatatagtcc--ctt-ttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-cata 110  Q
    ||||||||||||||||| |  ||| ||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||| || ||||    
T  28857831 gatcttaataatatagttcatcttcttatgttttctgcccttggagaagttagaggttagagtggtggagacaccatataagagtggtcatagtatcata 28857930  T
Q  111 taagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagt 210  Q
    |||||||||| ||| |||||||| |||||| ||||||| ||||||||||||||| ||| || |||||| |||| |||||||||||  || ||  ||||||    
T  28857931 taagagtggtcttaataccataacagagtgatatcaatatcatattagagtggttttaacatcatattggaagatgtatttctagagcagatcctatagt 28858030  T
Q  211 gcaataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||| || |||||||||||    
T  28858031 gcaataggactttgatacagttttagctgagctattttatcctggggacgtcgtggttga 28858090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 23192993 - 23193250
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atata 112  Q
    |||||||| ||||||  ||||||| ||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||| || ||| |||||    
T  23192993 gatcttaagaatataccccctttttatgttttatgcccttggagaagttaaaggtttgagtggtggaaacaccatattagagtggtcttagtaccatata 23193092  T
Q  113 agagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgc 212  Q
    ||| |||| |||||||||||||| | ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||    
T  23193093 agaatggtcttagtaccataataaaatggtatcaataccatattagagtggtcttagcaccatatttgaaggtgtatttctagaacagatcctatagtgc 23193192  T
Q  213 aataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||||||||||| | ||| |||||| || | | ||||||| ||| |  |||||||||||    
T  23193193 aataggactctaagacatttgtagatgagttgttttatcatgggggcgtcgtggttga 23193250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 27761631 - 27761866
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||  || ||| ||||||||||||| |||||| |||||    
T  27761631 ttttatattttatgcccttggagaagttagaggttagagtggtggagacaccatataagagtggttctagtaccatataagagtggtcttagtatcataa 27761730  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||  ||||||||||||||| ||| ||  |||||||||||| | |||||||||| |||    
T  27761731 tagaatggtatcaataccatattggaatggtcttagcaccatattgaaaggtgtatttctagaacagatcctatagtgcaatatg-ctctgatacaattg 27761829  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||||||| || ||||||||||| || |||||||||||    
T  27761830 tagctggactgttttatcctggggacgtcgtggttga 27761866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 2493590 - 2493830
Alignment:
Q  15 gatcttaataatatagtccct-tttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atata 112  Q
    |||||||| ||||||  |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| || |||||    
T  2493590 gatcttaagaatataacccctatttatgttttatgcccttggagaagttagaggttagagcggtggaaacaccatattagagtggtcttaaaactatata 2493689  T
Q  113 agagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgc 212  Q
    ||| |||| ||| || ||| ||||||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||| ||| |   ||||||||    
T  2493690 agaatggtcttaatatcatgatagagtggtatcaataccatattagaatggtcttagcaccatatttgaatgtgtatttctagaacagaccctatagtgc 2493789  T
Q  213 aataggactctgatacagttgtagctgggctattttatcctgg 255  Q
    |||||||   ||||||  ||||||||| | | |||||||||||    
T  2493790 aatagga--ttgatacgattgtagctgagttgttttatcctgg 2493830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 32987566 - 32987325
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataataca-tata 112  Q
    ||||| || ||||||||||||||| |||||||| ||||||| | || ||||||||||||| |||||||||||| ||||||||||||| || |||| |||     
T  32987566 gatctcaagaatatagtccctttttatgttttaagcccttgtataagttagaggttagagtggtggaaacaccgtattagagtggtcctagtacattatt 32987467  T
Q  113 agagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatat-ttgaaggtgtatttctaggacatattatatagtg 211  Q
    |||||| | || ||||||||||||||||||||||||  |||||| ||||| |||||||||||||| |||||| ||||||||||  | | || ||||||||    
T  32987466 agagtgatctttgtaccataatagagtggtatcaataccatattggagtgatcttagcaccatatattgaagatgtatttctaaaagagatcatatagtg 32987367  T
Q  212 caataggactctgatacagttgtagctgggctattttatcct 253  Q
    |||||||||||||||||| |||||| ||| || |||| ||||    
T  32987366 caataggactctgatacaattgtagttggactgttttctcct 32987325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 72 - 270
Target Start/End: Original strand, 33380747 - 33380948
Alignment:
Q  72 agaggtggaaacaccatattagagtggtcataatac-atataagagtggtgt--tagtaccataatagagtggtatcaatgtcatattagagtggtctta 168  Q
    |||||||||||||||||||||||||||||  ||||| |||||||| || | |  |||||||||||||||||||||||  |  |||||| ||||||| | |    
T  33380747 agaggtggaaacaccatattagagtggtctcaataccatataagaatgatatattagtaccataatagagtggtatcggtaccatattggagtggtttaa 33380846  T
Q  169 gcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggtt 268  Q
    | |||||||| |||||||||||||||| ||| ||  |||||||||||| ||||||| |||||||||||||||||| ||||||| ||| || |||||||||    
T  33380847 gaaccatattggaaggtgtatttctagaacagatcctatagtgcaatatgactctggtacagttgtagctgggctgttttatcttggggacgtcgtggtt 33380946  T
Q  269 ga 270  Q
    ||    
T  33380947 ga 33380948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 24159707 - 24159826
Alignment:
Q  151 catattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgggctattttat 250  Q
    |||| ||||||||| |||| |||||||  |||||||||||||||| ||| || |||||||||||||| ||| ||||||||||||||||| ||| ||||||    
T  24159707 cataatagagtggttttagaaccatatcggaaggtgtatttctagaacagatcatatagtgcaatagaactatgatacagttgtagctgagctgttttat 24159806  T
Q  251 cctggagatgtcgtggttga 270  Q
    ||||| || ||||| |||||    
T  24159807 cctggggacgtcgtcgttga 24159826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 24159613 - 24159720
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||| | ||| ||||||||| ||| || ||||||||| ||| || || || ||| ||||||||||||| ||||||||||||    
T  24159613 ttttatgttttatgcccttggaggagtta-aggttagagtggttgagacaccatataagactgatcctagtaccatataagagtggtcttagtaccataa 24159711  T
Q  134 tagagtggt 142  Q
    |||||||||    
T  24159712 tagagtggt 24159720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 19309436 - 19309568
Alignment:
Q  117 tggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagc----accatatttgaaggtgtatttctaggacatattatatagtgc 212  Q
    |||| |||||||||||||||||||||||||  | ||||| ||||||||||||||    |||||||||||||    || | ||| ||||||  ||||||||    
T  19309436 tggtcttagtaccataatagagtggtatcacagccatat-agagtggtcttagctagcaccatatttgaag----atatatagaacatatcctatagtgc 19309530  T
Q  213 aataggactctgatacagttgtagctgggctattttat 250  Q
    ||||||||| ||||||| |||||| |||||| ||||||    
T  19309531 aataggactttgatacaattgtagttgggctcttttat 19309568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 9328213 - 9328307
Alignment:
Q  15 gatcttaataatatagtccctttta-tgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataataca 108  Q
    |||||||||||||||||  |||| | || |||||||||||||| || | ||||||||||  ||||||||||| |||||||||| |||||| ||||    
T  9328213 gatcttaataatatagtaactttcaatgctttatgcccttggaaaagtaagaggttagaatggtggaaacactatattagagtcgtcatagtaca 9328307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 19309376 - 19309434
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttaga 72  Q
    |||||||||||||||| ||||||| |||  ||||||| |||||||| ||||||||||||    
T  19309376 gatcttaataatatagcccctttttatggcttatgcctttggagaagttagaggttaga 19309434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 25654598 - 25654691
Alignment:
Q  150 tcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatata--gtgcaataggactctgatacagttgtagctggg 241  Q
    ||||||||||||||||||| |||||||||| |||  |||||||||| ||| || ||| |   |||| |||||||| |||| |||||||| ||||    
T  25654598 tcatattagagtggtcttaacaccatatttaaagtcgtatttctagaacagatcatacaatatgcagtaggactccgatatagttgtagttggg 25654691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 25779065 - 25779114
Alignment:
Q  52 ttggagaaattagaggttagagaggtggaaacaccatattagagtggtca 101  Q
    |||||||| ||||||||||||  ||||| ||||||||||| |||||||||    
T  25779065 ttggagaagttagaggttagaatggtggtaacaccatatttgagtggtca 25779114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 33722692 - 33722944
Alignment:
Q  15 gatcttaataatatagtccct-tttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atata 112  Q
    |||||||| |||||| | ||| |||||||||||||||||| ||||  ||||||||||||| |||||||||| ||||||||||||||| |||||| |||||    
T  33722692 gatcttaagaatataattcctatttatgttttatgccctttgagaggttagaggttagagtggtggaaacatcatattagagtggtcctaataccatata 33722791  T
Q  113 agagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgc 212  Q
    |||||||| | |||||||||||| ||||||||| ||  |||||| ||||||||||||||  |||||||||||||||||||||| ||| ||  ||||||||    
T  33722792 agagtggtctcagtaccataataaagtggtatctataccatattggagtggtcttagca--atatttgaaggtgtatttctagaacagatcttatagtgc 33722889  T
Q  213 aataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggt 267  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  33722890 aataggactctgatacagttgtagctgggctgttttatcctggggacgtcgtggt 33722944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 15020237 - 15020478
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atata 112  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| || ||| |||||    
T  15020237 gatcttaagaatatagtccctttttatgttttatgcctttggagaagttagaggttagagtggtggaaacaccatattagagtggtcctagtaccatata 15020336  T
Q  113 agagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgc 212  Q
    |||||||| ||||||| |||||||||||||||||||  || ||| |||||||||| | ||||||||||||||||||||||||| ||||||  ||||||||    
T  15020337 agagtggtcttagtac-ataatagagtggtatcaataccaaattggagtggtcttcgtaccatatttgaaggtgtatttctagaacatatcctatagtgc 15020435  T
Q  213 aataggactctgatacagttgtagctgggctattttatcctgg 255  Q
    |||  |||||||||||| |||||| || ||| |||||||||||    
T  15020436 aatgagactctgatacaattgtagttgtgctgttttatcctgg 15020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 20513410 - 20513174
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||| | ||||||||| ||| |||||| ||| ||||| ||| ||||| || ||| ||||||||||||| ||||||||||||    
T  20513410 ttttatgttttatgcccttggaggagttagaggttggagtggtggagacatcatataagactggtcctagtaccatataagagtggtcttagtaccataa 20513311  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||||||||||  |||||| ||||||||||| || |||||| |||||||||||||||| ||| ||  |||||||||||||||||||||||||||||    
T  20513310 tagagtggtatcaataccatattggagtggtcttaacatcatattggaaggtgtatttctagaacagatcctatagtgcaataggactctgatacagttg 20513211  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||| | | |||||||||||  | |||||||||||    
T  20513210 tagctgagttgttttatcctgggaacgtcgtggttga 20513174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 35 - 254
Target Start/End: Original strand, 55081494 - 55081714
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    |||||| |||||||||||||||| | ||||||||||||| |||||| ||| ||||| ||| | ||| || ||| ||||||||||||| ||||||||||||    
T  55081494 ttttatattttatgcccttggaggagttagaggttagagtggtggagacatcatataagactagtcctagtaccatataagagtggtcttagtaccataa 55081593  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||||||||||  |||||| |||||||||||| |||||||| |||||||||||||||| ||| ||  |||||| ||||| ||||||||||||||||    
T  55081594 tagagtggtatcaataccatattggagtggtcttagaaccatattggaaggtgtatttctagaacagatcctatagtacaataagactctgatacagttg 55081693  T
Q  234 tagctgggctattttatcctg 254  Q
    |||||| ||| ||||||||||    
T  55081694 tagctgagctgttttatcctg 55081714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 16595804 - 16595916
Alignment:
Q  107 catataagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattata 206  Q
    |||||||||||||| |||||||||||||||||||||||||||  ||||||  ||||||||||   ||||||| |||||||||||||||| ||| ||  ||    
T  16595804 catataagagtggtcttagtaccataatagagtggtatcaataccatattgaagtggtcttaaagccatattggaaggtgtatttctagaacagatctta 16595903  T
Q  207 tagtgcaatagga 219  Q
    |||||||||||||    
T  16595904 tagtgcaatagga 16595916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 2575072 - 2575189
Alignment:
Q  16 atcttaataatatagtcccttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-catataag 114  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||| | || ||| | ||||||||||||||| || || |||||||     
T  2575072 atcttaacaatatagtcccttttatattttatgcccttgtagaagttagaggttagagtgttgaaaatatcatattagagtggtcctagtaccatataaa 2575171  T
Q  115 agtggtgttagtaccata 132  Q
    |||||| |||||||||||    
T  2575172 agtggtcttagtaccata 2575189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 2575172 - 2575252
Alignment:
Q  159 agtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctg 239  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||||||| ||||| |||| |||||||||||    
T  2575172 agtggtcttagtaccatatttgaaggtgtatttttagaacatattctatagtgcaatatgactcagatatagttgtagctg 2575252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 40684648 - 40684735
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtca 101  Q
    ||||||||||| ||||||| |||| |||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||    
T  40684648 gatcttaataagatagtccttttttatgtttcatgcccttggagaaatcagaggttagagtggtggaaacatcatattagagtagtca 40684735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 40684733 - 40684844
Alignment:
Q  144 tcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgggct 243  Q
    ||||| || |||| |||| ||||||||||||||||| ||||||||||| ||  ||| ||| ||| ||| |||||||||||||||||||||||| || | |    
T  40684733 tcaatatcgtattggagttgtcttagcaccatatttaaaggtgtatttataaaacaaattctatggtgtaataggactctgatacagttgtaggtgagtt 40684832  T
Q  244 attttatcctgg 255  Q
     |||||||||||    
T  40684833 gttttatcctgg 40684844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 2574450 - 2574378
Alignment:
Q  93 gagtggtcataatac-atataagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggt 164  Q
    ||||||||||| ||| ||||||| ||||| ||||||| ||||||||||| ||||||| |||||||| ||||||    
T  2574450 gagtggtcatagtaccatataagtgtggtcttagtactataatagagtgatatcaatatcatattaaagtggt 2574378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 39991786 - 39991830
Alignment:
Q  151 catattagagtggtcttagcaccatatttgaaggtgtatttctag 195  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||    
T  39991786 catattagagtggtcttagcaccatatttgaaggtctatatctag 39991830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 16954655 - 16954601
Alignment:
Q  49 cccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcata 103  Q
    ||||||||||| ||||||||||||  ||||| | ||||||||| |||||||||||    
T  16954655 cccttggagaagttagaggttagaatggtggtagcaccatatttgagtggtcata 16954601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 5271332 - 5271368
Alignment:
Q  157 agagtggtcttagcaccatatttgaaggtgtatttct 193  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  5271332 agagtggtcttagcaccatatttggaggtgtaattct 5271368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 48435600 - 48435855
Alignment:
Q  15 gatcttaataatatagtcccttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-catataa 113  Q
    |||||||| |||||| ||  ||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||||||||  || || ||||||     
T  48435600 gatcttaagaatataatcttttttatgttatatgcccttggataagttagaggttagagtggtggaaacaccatattagagtggttttagtatcatata- 48435698  T
Q  114 gagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgca 213  Q
    || |||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  ||| ||  | || ||||    
T  48435699 gaatggtcttagtaccataatagagtggtatcaataccatattagagtggtcttagcaccatatttgaaggtgtatttctaaaacagatcctttaatgca 48435798  T
Q  214 ataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||||||||||||| ||||||||| ||| ||||||||||| || |||||||||||    
T  48435799 ataggactctgatacaattgtagctgagctgttttatcctggggacgtcgtggttga 48435855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 48432075 - 48432282
Alignment:
Q  19 ttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagag 116  Q
    |||| |||||| |||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| || ||| ||||||||     
T  48432075 ttaagaatataatccctttttatgttatatgcccttggagaagttagaggttagagtggtggaaacaccatattatagtggtcttagtaccatataagaa 48432174  T
Q  117 tggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaata 216  Q
    |||| || ||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||  || |||||||||    
T  48432175 tggtcttggtaccataatagagtggtatcaataccatattagagtggtcttaacaccatatttgaaggtgtatttctagaacagatcctacagtgcaata 48432274  T
Q  217 ggactctg 224  Q
    ||||||||    
T  48432275 ggactctg 48432282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 123 - 270
Target Start/End: Complemental strand, 16983209 - 16983062
Alignment:
Q  123 tagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactc 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||     
T  16983209 tagtaccataatagagtggtatcaatatcatattagagtggtcttagcaccatatttgaaggtgtatttctagaacagatcctatagtgcaataggactt 16983110  T
Q  223 tgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||||||||||||||||||| | ||||||||||| ||  ||||||||||    
T  16983109 tgatacagttgtagctgggttgttttatcctggggacatcgtggttga 16983062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 105 - 270
Target Start/End: Original strand, 12156343 - 12156508
Alignment:
Q  105 tacatataagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatatta 204  Q
    |||||||||||||||  ||||||||||||||||||| | |||||  |||||||||||||||||||||||||||| ||||||||||||||||  || || |    
T  12156343 tacatataagagtgggcttagtaccataatagagtgatgtcaataccatattagagtggtcttagcaccatattagaaggtgtatttctagatcagatca 12156442  T
Q  205 tatagtgcaataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||| ||||| ||||||||||| |||| | |||| || ||||||| ||| || |||||||||||    
T  12156443 tatagtacaatatgactctgatacggttgcaactggactgttttatcatggggacgtcgtggttga 12156508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 28243302 - 28243504
Alignment:
Q  24 aatatagtcccttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataataca-tataagagtggtgt 122  Q
    ||||||||| ||||||||| ||||||| |||||||| ||| ||||||||| |||||||| ||||||||| ||||||| || |||  ||||||| ||||      
T  28243302 aatatagtctcttttatgtgttatgcctttggagaagttaaaggttagagtggtggaaaaaccatattatagtggtcctagtaccgtataagaatggtca 28243401  T
Q  123 tagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactc 222  Q
    ||||||| |||| ||||| |||| ||  |||||||||||| |||||||||||||||| || |||| ||||||| | | ||  ||||||| ||||||||||    
T  28243402 tagtaccctaatggagtgatatcgataccatattagagtgatcttagcaccatatttaaaagtgtgtttctagaatagatcttatagtgtaataggactc 28243501  T
Q  223 tga 225  Q
    |||    
T  28243502 tga 28243504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 4662469 - 4662305
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcata-atacatataagagtggtgttagtaccataa 133  Q
    |||||||||||| ||| |||||||  ||| ||||||||| |||||||||||||||||||| ||||| || |  ||||||||| |||| |||||| |||||    
T  4662469 ttttatgttttacgccattggagatgttaaaggttagagtggtggaaacaccatattagaatggtcttagaaccatataagaatggtcttagtatcataa 4662370  T
Q  134 tagagtgg----tatcaatgtcatattagagtggtcttag----caccatatttgaaggtgtatt 190  Q
    ||| ||||    |||||||  ||||| |||||||||||||    |||||||||||||||||||||    
T  4662369 tagtgtggtatatatcaataccatatgagagtggtcttagctaacaccatatttgaaggtgtatt 4662305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 29067921 - 29067983
Alignment:
Q  132 aatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttcta 194  Q
    ||||||||||||||||| ||||||| ||||||||||| || ||||||| ||||| ||||||||    
T  29067921 aatagagtggtatcaatttcatattggagtggtcttaccatcatatttaaaggtttatttcta 29067983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 16983341 - 16983258
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaa---ttagaggttagagaggtggaaacaccatattaga 94  Q
    |||||||| |||||| |||||||| |||||||||||||| |||||||   ||||||||||||| || ||||||||||||| |||    
T  16983341 gatcttaagaatataatccctttttatgttttatgccctaggagaaaaagttagaggttagagtggcggaaacaccatataaga 16983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 48432528 - 48432476
Alignment:
Q  218 gactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||||||||||||||||||||| |||| ||||||| ||| || |||||||||||    
T  48432528 gactctgatacagttgtagctaggctgttttatcttggggacgtcgtggttga 48432476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 268
Target Start/End: Original strand, 1286058 - 1286291
Alignment:
Q  36 tttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataat 134  Q
    ||||||||||||||| |||||||| || || ||||||| |||||||||||| ||||||| ||||| || ||| ||||||||||||| |||||||||||||    
T  1286058 tttatgttttatgcctttggagaagttggatgttagagtggtggaaacaccgtattagattggtcctagtaccatataagagtggtcttagtaccataat 1286157  T
Q  135 agagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgt 234  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||  ||||||||||||||||||||||| ||||||    
T  1286158 agagtggtatcaataccatattggagtggtcttagcaccatatttgaatgtgtatttctagaacagatcctatagtgcaataggactctgatagagttgt 1286257  T
Q  235 agctgggctattttatcctggagatgtcgtggtt 268  Q
    ||||| | | ||||||| |||||| |||||||||    
T  1286258 agctgagttgttttatcatggagacgtcgtggtt 1286291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 18265296 - 18265532
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||| ||||||||| ||||||||| || ||| ||||||||||||| ||||||||||||    
T  18265296 ttttatgttttatgcccttggagatgttagaggttagagtggtggagacaccatataagagtggtcctagtaccatataagagtggtcttagtaccataa 18265395  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    | || || |||||||  |||||| || |||||||||||||||||| |||||||||||||||  ||| || ||| ||| ||||| ||||||||||||||||    
T  18265396 ttgaatgatatcaataccatattggattggtcttagcaccatattggaaggtgtatttctataacagatcatagagtacaataagactctgatacagttg 18265495  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||| ||| ||||||| ||| || |||||||||||    
T  18265496 tagctgagctgttttatcatggggacgtcgtggttga 18265532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 25215031 - 25215148
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaa---acaccatattagagtggtcataata-catataagagtggtgttagtacca 130  Q
    ||||||||||||||| ||||||||| ||||||||||||  ||||| |   ||  ||||||||||||||  || || ||||| |||||||  |||||||||    
T  25215031 ttttatgttttatgcacttggagaagttagaggttagaatggtggtaattacgtcatattagagtggttctagtatcatattagagtggacttagtacca 25215130  T
Q  131 taatagagtggtatcaat 148  Q
    ||||||| || |||||||    
T  25215131 taatagaatgatatcaat 25215148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 25279182 - 25279299
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaa---acaccatattagagtggtcataata-catataagagtggtgttagtacca 130  Q
    ||||||||||||||| ||||||||| ||||||||||||  ||||| |   ||  ||||||||||||||  || || ||||| |||||||  |||||||||    
T  25279182 ttttatgttttatgcacttggagaagttagaggttagaatggtggtaattacgtcatattagagtggttctagtatcatattagagtggacttagtacca 25279281  T
Q  131 taatagagtggtatcaat 148  Q
    ||||||| || |||||||    
T  25279282 taatagaatgatatcaat 25279299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 25184668 - 25184733
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtc 100  Q
    |||| ||||||||||   ||||||| ||||||| ||| | ||||||||||||||||||| ||||||    
T  25184668 ttttttgttttatgcaaatggagaagttagaggctagtgtggtggaaacaccatattagtgtggtc 25184733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 36423819 - 36423783
Alignment:
Q  157 agagtggtcttagcaccatatttgaaggtgtatttct 193  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  36423819 agagtggtcttagcaccatatttggaggtgtaattct 36423783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 19954576 - 19954340
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||| ||| ||||| ||| ||||| || ||| ||||||||||||| ||||||| ||||    
T  19954576 ttttatgttttatgcccttggaggagttagaggttagagtggtggagacatcatataagactggtcctagtaccatataagagtggtcttagtacaataa 19954477  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||||||||||  |||||| ||||| ||||||||||||||| |||||||||||||||| ||| ||  ||||||||||||||||||| |||||||||    
T  19954476 tagagtggtatcaataccatattggagtgatcttagcaccatattggaaggtgtatttctagaacagatcctatagtgcaataggactcttatacagttg 19954377  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
     ||||||||| |||||||  || || |||||||||||    
T  19954376 cagctgggctgttttatcaaggggacgtcgtggttga 19954340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 2470278 - 2470042
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||| |||| |||| ||| ||||| || ||| ||||||||||||| ||||||| ||||    
T  2470278 ttttatgttttatgcccttggaggagttagaggttagagtggtggagacactatataagactggtcctagtaccatataagagtggtcttagtactataa 2470179  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    || ||||||||||||  |||||| |||||||||||| |||||||| |||||| ||||||| | ||| ||  |||||||||||||||||||||||||||||    
T  2470178 taaagtggtatcaataccatattggagtggtcttagaaccatattggaaggtatatttctcgaacaaatcctatagtgcaataggactctgatacagttg 2470079  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||| | | ||||||||||| || ||||| |||||    
T  2470078 tagctgtgttgttttatcctggggacgtcgtagttga 2470042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 30779193 - 30778954
Alignment:
Q  14 cgatcttaataatatagtccctttta-tgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atat 111  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| || ||| ||||    
T  30779193 cgatcttaataatatagtctctttcaatgttttatgcccttggagaagttagaggttagagtggtggaaacaccatattagagttgtcttagtaccatat 30779094  T
Q  112 aagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtg 211  Q
     ||| | || || |||||||||||||||||||||| |  ||||||  ||||||||||||||||| |||||| |||||||||||| ||| ||  |||||||    
T  30779093 tagaatagtcttggtaccataatagagtggtatcagtaccatattgaagtggtcttagcaccatttttgaaagtgtatttctagaacagatcctatagtg 30778994  T
Q  212 caataggactctgatacagttgtagctgggctattttatc 251  Q
     |||| |||||||||||||||||||||  ||| |||||||    
T  30778993 taatatgactctgatacagttgtagctaagctgttttatc 30778954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 35 - 254
Target Start/End: Complemental strand, 19950122 - 19949902
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataa 133  Q
    ||||||||||||||||||||||| | |||||| |||||| |||||| ||||||||| ||| ||||| || || |||||||||||||| ||||||||||||    
T  19950122 ttttatgttttatgcccttggaggagttagagattagagtggtggagacaccatataagactggtcctagtatcatataagagtggtcttagtaccataa 19950023  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||||||||||  |||||| |||||||||||| |||||||| || ||||||||||||| ||| ||  ||||||||||||||| ||| ||||| |||    
T  19950022 tagagtggtatcaataccatattggagtggtcttagaaccatattggatggtgtatttctagaacagatcctatagtgcaataggattcttatacaattg 19949923  T
Q  234 tagctgggctattttatcctg 254  Q
     ||||| ||| ||||||||||    
T  19949922 cagctgagctgttttatcctg 19949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 7146141 - 7145903
Alignment:
Q  15 gatcttaataatatagtccctttt--atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atat 111  Q
    ||||||||||||||||||  ||||  || |||||| ||||| ||||| | |||||||| |  |||||||||| |||||||||||||||||||||| ||||    
T  7146141 gatcttaataatatagtcaattttctatattttatacccttagagaagtaagaggttaaaatggtggaaacatcatattagagtggtcataataccatat 7146042  T
Q  112 aagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtg 211  Q
     |||||||  |||||||||||||| |||||| | ||| ||||||| ||||||| ||| |||||||| | ||||||||||||||| ||||||  || | ||    
T  7146041 tagagtggccttagtaccataatacagtggtgtaaatatcatattggagtggttttaacaccatatctaaaggtgtatttctagaacatatcctacaatg 7145942  T
Q  212 caataggactctgatacagttgtagctgggctattttat 250  Q
    || |||||||| |||||||||||||||| ||| ||||||    
T  7145941 cagtaggactccgatacagttgtagctgagctgttttat 7145903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 4544084 - 4544219
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataa 133  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||| || || ||||||||||| || ||||||||||||    
T  4544084 ttttatattttatgcccttggagaagttagaggttagagtggtggagacaccatataagagtggtcctagtaccatataagagtagtcttagtaccataa 4544183  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttag 169  Q
    |||| ||||||||||  ||||||  | |||||||||    
T  4544184 tagaatggtatcaataccatattgaaatggtcttag 4544219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 270
Target Start/End: Complemental strand, 34517534 - 34517308
Alignment:
Q  44 ttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataatagagtggt 142  Q
    ||||||||||| |||| | ||||||||||  |||| |||||| |||||| ||||||||||||| ||||| |||||||| |   ||||| |||||||||||    
T  34517534 ttatgcccttgaagaagtaagaggttagaatggtgtaaacacaatattatagtggtcataatatcatattagagtggtctcgctaccaaaatagagtggt 34517435  T
Q  143 atcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgggc 242  Q
    |  ||| ||||||   |||||| ||||||| ||||||||| |||||||| ||| ||||||  || | | || |||||||||||||||||||||| || |     
T  34517434 a-aaatatcatatccaagtggttttagcacaatatttgaaagtgtatttttagaacatatcttacaatacagtaggactctgatacagttgtagttgagt 34517336  T
Q  243 tattttatcctggagatgtcgtggttga 270  Q
    | ||||||| ||| |  |||||||||||    
T  34517335 tgttttatcttgggggcgtcgtggttga 34517308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 27236201 - 27236325
Alignment:
Q  107 catataagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattata 206  Q
    ||||| |||||| | ||||| ||||||||||||| |||||||  ||||||||||||||||||| ||||||||| ||||| ||||||||   || || |||    
T  27236201 catattagagtgatcttagtgccataatagagtgatatcaataccatattagagtggtcttagtaccatatttaaaggtatatttctatagcagatcata 27236300  T
Q  207 tagtgca--ataggactctgataca 229  Q
    ||||| |  ||||||||||||||||    
T  27236301 tagtgtaatataggactctgataca 27236325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 27236128 - 27236212
Alignment:
Q  15 gatcttaataatatagtccctttt-atgtttt-atgcccttggagaaattagaggttagagaggtggaaacaccatattagagtg 97  Q
    |||||||||||||||||| ||||| ||||||| |||| ||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  27236128 gatcttaataatatagtctctttttatgtttttatgctcttcgagaaattaaaggttagagtggtggaaacaccatattagagtg 27236212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 28237972 - 28237860
Alignment:
Q  156 tagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgggctattttatcctgg 255  Q
    ||||||| ||||| |||||||||||| ||||||||| ||| ||| |   | |||||||||||||||||||||||||||||| |||| | ||||||||||     
T  28237972 tagagtgctcttaacaccatatttgatggtgtatttttagaacaga--ctctagtgcaataggactctgatacagttgtagttgggttgttttatcctga 28237875  T
Q  256 agatgtcgtggttga 270  Q
    | | |||||||||||    
T  28237874 aaacgtcgtggttga 28237860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 38182120 - 38182181
Alignment:
Q  127 accataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgta 188  Q
    ||||||| ||||||||| |||| |||||||| |||||| |||| ||||||||||||||||||    
T  38182120 accataacagagtggtaacaatatcatattaaagtggttttagtaccatatttgaaggtgta 38182181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 4544221 - 4544278
Alignment:
Q  213 aataggactctgatacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||||||||||||||||||||||||||| || ||||||||| | || || ||||||||    
T  4544221 aataggactctgatacagttgtagctggactgttttatcctagggacgtagtggttga 4544278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 21416524 - 21416606
Alignment:
Q  15 gatcttaataatatagtccctttt-atgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagt 96  Q
    ||||||||||||||||||| |||  || |||||||||||||||||| | |||||||| |  |||||||| || |||| |||||    
T  21416524 gatcttaataatatagtccatttccatattttatgcccttggagaagtaagaggttaaaatggtggaaatacgatatcagagt 21416606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 25832154 - 25832390
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataatac-atataagagtggtgttagtaccataa 133  Q
    |||||||||||||||| || ||||| ||| ||||||||| |||||||||||||||||||||||||| || ||| ||||||||||| | |||||| |||||    
T  25832154 ttttatgttttatgccttttgagaagttataggttagagtggtggaaacaccatattagagtggtcttagtaccatataagagtgatcttagtatcataa 25832253  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||  || ||| ||||||| ||||||||||| |||||||||| || |||||||||||  ||| ||| ||||||| |||| ||||||||||||||||    
T  25832254 tagagtgacattaatatcatattggagtggtcttaacaccatatttaaaagtgtatttctataacagattctatagtgtaatatgactctgatacagttg 25832353  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||| |||| | ||||||| ||| |  |||||||||||    
T  25832354 taggtgggttgttttatcatgggggcgtcgtggttga 25832390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 29478020 - 29478163
Alignment:
Q  108 atataagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatat 207  Q
    |||||||| || | ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||  | |    
T  29478020 atataagaatgatcttagtactataatagagtggtatcaataccatattagagtggtcttagcaccatatttgaaggtgtatttctagaacatatcctgt 29478119  T
Q  208 agtgcaataggactctgatacagttgtagctgggctattttatc 251  Q
     |||||||| |||| |||||| ||||||||||||||||||||||    
T  29478120 ggtgcaatatgactatgatactgttgtagctgggctattttatc 29478163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 6898265 - 6898383
Alignment:
Q  151 catattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttgtagctgggctattttat 250  Q
    ||||| ||||||||||||||| |||||| |||||||||||| ||| ||| ||  |||||||||||||||||||||||||||||| |||||| |  |||||    
T  6898265 catataagagtggtcttagcatcatattggaaggtgtatttttagaacagatcctatagtgcaataggactctgatacagttgttgctggg-ttgtttat 6898363  T
Q  251 cctggagatgtcgtggttga 270  Q
    ||||| || || ||||||||    
T  6898364 cctggggacgttgtggttga 6898383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 6898169 - 6898283
Alignment:
Q  15 gatcttaataatatagt---cccttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-cata 110  Q
    |||||||||||||||||    | ||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||| ||| ||||| || || ||||    
T  6898169 gatcttaataatatagttcatctttttatgttttatgcccttggaggagttagaggttagagtggtggagacaccatataagactggtcctagtaccata 6898268  T
Q  111 taagagtggtgttag 125  Q
    |||||||||| ||||    
T  6898269 taagagtggtcttag 6898283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 270
Target Start/End: Original strand, 23616265 - 23616409
Alignment:
Q  126 taccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctga 225  Q
    ||||||| || |||||| ||| |  |||| ||||||||||||||||||||||||||||||| |||||||| |   ||  ||||||||| ||||| |||||    
T  23616265 taccatattatagtggtctcagtaccataatagagtggtcttagcaccatatttgaaggtgaatttctagaatggatcctatagtgcagtaggattctga 23616364  T
Q  226 tacagttgtagctgggctattttatcctggagatgtcgtggttga 270  Q
    |||| |||||| || | | ||||||| ||  || |||||||||||    
T  23616365 tacaattgtagttgagttgttttatcatgaggacgtcgtggttga 23616409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 23616235 - 23616303
Alignment:
Q  75 ggtggaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataatagagtggt 142  Q
    |||||||||| |||||| |||||||||||||| ||||| | |||||| | |||||||||||||||||||    
T  23616235 ggtggaaacatcatatttgagtggtcataataccatattatagtggtctcagtaccataatagagtggt 23616303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 20130168 - 20130282
Alignment:
Q  79 gaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataatagagtggtatcaatgtcatattagagtggtcttagcaccatat 177  Q
    |||||||| |||||||||| ||||| || ||||  |||||||| |  |||||||| ||||||||||  |||  ||||   ||||||||||||||||||||    
T  20130168 gaaacaccgtattagagtgatcatagtatcatacgagagtggtctatgtaccatactagagtggtagaaataccataacggagtggtcttagcaccatat 20130267  T
Q  178 ttgaaggtgtatttc 192  Q
    || || |||||||||    
T  20130268 ttaaaagtgtatttc 20130282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 4333541 - 4333595
Alignment:
Q  17 tcttaataatatagtccctttta-tgttttatgcccttggagaaattagaggtta 70  Q
    |||||| |||||||| | ||||| ||||||||||||||| |||||||||||||||    
T  4333541 tcttaagaatatagttcattttaatgttttatgcccttgaagaaattagaggtta 4333595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 4337788 - 4337842
Alignment:
Q  17 tcttaataatatagtccctttta-tgttttatgcccttggagaaattagaggtta 70  Q
    |||||| |||||||| | ||||| ||||||||||||||| |||||||||||||||    
T  4337788 tcttaagaatatagttcattttaatgttttatgcccttgaagaaattagaggtta 4337842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 1289214 - 1289275
Alignment:
Q  126 taccataatagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgt 187  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||| ||||||||| |||||||    
T  1289214 taccataatagagtgctatcaataccataatgaagtggtcttagaaccatatttaaaggtgt 1289275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 45748413 - 45748465
Alignment:
Q  49 cccttggagaaattagaggttagagaggtggaaacaccatattagagtggtca 101  Q
    ||||||||||| ||| ||||||||   |||||||||||||||| |||||||||    
T  45748413 cccttggagaagttataggttagaagagtggaaacaccatatttgagtggtca 45748465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 171510 - 171742
Alignment:
Q  35 ttttatgttttatgcccttggagaaattagaggttagagaggtggaaacaccatattagagtggtcataata-catataagagtggtgttagtaccataa 133  Q
    |||||||||||||||||||||||  |||||||||||||  |||||| ||||   || ||| ||||| || || |||||||||||| | ||||||||||||    
T  171510 ttttatgttttatgcccttggaggcattagaggttagactggtggagacac---ataagactggtcctagtaccatataagagtgatcttagtaccataa 171606  T
Q  134 tagagtggtatcaatgtcatattagagtggtcttagcaccatatttgaaggtgtatttctaggacatattatatagtgcaataggactctgatacagttg 233  Q
    |||||||||||||||  |||||| ||||| |||||| |||||||| |||||||||||||||| ||| ||  ||||||||||||||| ||| |||||||||    
T  171607 tagagtggtatcaataccatattggagtgatcttagaaccatattggaaggtgtatttctagaacagatcctatagtgcaataggattcttatacagttg 171706  T
Q  234 tagctgggctattttatcctggagatgtcgtggttga 270  Q
    ||| |||||| ||||||||| | || |||||||||||    
T  171707 tagttgggctgttttatcctag-gacgtcgtggttga 171742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 12526 - 12472
Alignment:
Q  17 tcttaataatatagtccctttta-tgttttatgcccttggagaaattagaggtta 70  Q
    |||||| |||||||| | ||||| |||||||||||||||||||||||||||||||    
T  12526 tcttaagaatatagttcattttaatgttttatgcccttggagaaattagaggtta 12472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University