View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_66 (Length: 257)
Name: NF20003_high_66
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 23345939 - 23345708
Alignment:
| Q |
10 |
aagaaaataaggaagcaaaaataatgcaatggcttcnnnnnnnataaaaacaaatagtaatgagtacgaaattcatcaagaattgca---attctttata |
106 |
Q |
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| T |
23345939 |
aagaaaataaggaagcaaaaataatgtaatggcttcttttttaa-aaaaacaaattgtaatgagtacgaaattcatcaagaattgcagcaattctttata |
23345841 |
T |
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| Q |
107 |
agagnnnnnnngaataccaaaaacaatagtacccaatatctattaaaaattgaaccaaagaaatataatttaaaatatctattaataacctataccctaa |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23345840 |
aga--aaaaaagaataccaaaaacaatagtacccaatatctattaaaagttgaaccaaagaaatataatttaaaatatctattaataacctataccctaa |
23345743 |
T |
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| Q |
207 |
attctagtttatttaggacacattttggattttgt |
241 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
23345742 |
attctagtttatttaggacacattttggattttgt |
23345708 |
T |
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