View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_76 (Length: 243)
Name: NF20003_high_76
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_76 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39429440 - 39429665
Alignment:
| Q |
1 |
ctgcctgaaagaaaatttgtaccggttcgtttgagacggccatcgtcgtcgtgtgaaatcagctctccttcgatgtcgaaagttctaagtctggttgttg |
100 |
Q |
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| T |
39429440 |
ctgcctgaaagaaaatttgtaccggttcgtttgagacggccatcgtcgtcgtgtgaaatcagctctccttcgatgtcgaaagttctaaggctagttgttg |
39429539 |
T |
|
| Q |
101 |
ttggtgtcgcttttacagtcatcacgattcgatttggtggaataaaccaagtagaataagaggtatatgagtgtgacattatggtatagaatggaggtat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39429540 |
ttggtgtcgcttttacagtcatcacgattcgatttggtggaatgaaccaagtagaataagaggtatatgagtgtgacattatggtatagaatggaggtat |
39429639 |
T |
|
| Q |
201 |
ttataggatgagtgtgatattgatcc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39429640 |
ttataggatgagtgtgatattgatcc |
39429665 |
T |
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