View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20003_high_81 (Length: 231)
Name: NF20003_high_81
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_81 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 43398826 - 43398628
Alignment:
| Q |
17 |
aattttacatggtttacaagaaagaccttgcaatattatatatgtgcgatttaaaaatgccttaagtttttaataataaattattcactatatactttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43398826 |
aattttacatggtttacaagaaagaccttgcaatattatatatgtgtgatttaaaaatgccttaagtttttaataataaattattcactatatactttca |
43398727 |
T |
|
| Q |
117 |
tcttatcgaatttcctgcttttccattttgtaaagaaataataaaatatcccttttaattatttatctctcttacctatttgtgcagcaacaatgtgtt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43398726 |
tcttatcgaatttcctgcttttccattttgtaaagaaataataaaatatcccttttaattatttatctctcttacctatttgtgcagcaacaatgtgtt |
43398628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 43414220 - 43414140
Alignment:
| Q |
85 |
tttaataataaattattcactatatactttcatcttatcgaatttcctgcttttccattttgtaaa---gaaataataaaat |
163 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
43414220 |
tttaataataaattat-cactatatactttcatcttattgagtttactgcttttccattttgtaaagtcgaaataataaaat |
43414140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University