View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_9 (Length: 573)
Name: NF20003_high_9
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 29462988 - 29463544
Alignment:
| Q |
1 |
cagcaaccaggacttgggagtcactaagacact--atgcttgaaatacccatttgttgcacccacttcgtaggttttaacagagccaaaccttcaacttc |
98 |
Q |
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| T |
29462988 |
cagcaacaaggacttgggagtcactaagaaaagtcatgcttgaaatacccatttgttgcacccacttcataggttttaacatagccaaatcttcaccttc |
29463087 |
T |
|
| Q |
99 |
atggatttgtaactcagggcttaaccaacctgtcactgccttcacaaaagcacctccctcgccgcggatacacgcaccataaccagttcgattgtaactt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29463088 |
atggatttgtaactcagggcttaaccaacctgtcactgccttcacaaaagctcctccctcgccgcggatacacgcaccataaccagttcgattgtaactt |
29463187 |
T |
|
| Q |
199 |
gtgaaaaaactagcatcaacattacaaatcatcccgtgcaccgctgtaccataatccctatcgtttctgctcactgttgcacggttgttctgctgcacat |
298 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29463188 |
gtgaaaaaactagcatcaacattacaaatcatcctgtgcaccgctgtaccataatccctatcgtttctgctcaccgttgcacggttgttctgctgcacat |
29463287 |
T |
|
| Q |
299 |
tctgagctgatatccattccccaagcatcatttgagccgaaacaacaatctgatgcgctgttgacgtcttctgattccacacgttttcgttttgctatgc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29463288 |
tctgagctgatatccattccccaagcatcatttgagccgaaacaacaatctgatgcgctgttgacgtcttctgattccacacattttcgttttgctatgc |
29463387 |
T |
|
| Q |
399 |
caaatactccatattaacgacatgaccttactgaccatctagttttatagtcatctgtaatactttttacatttggctaccttgcatgaattgcattttt |
498 |
Q |
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| T |
29463388 |
caaatactccatattaacgacatgaccttactgaccatctagttttatagtcatctgtaatactttttacatttggctaccttgcatgaattgcattttt |
29463487 |
T |
|
| Q |
499 |
gctttgtttgcttgtgaccctgctaacatccataaacattggattatcccttatccc |
555 |
Q |
| |
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| T |
29463488 |
gctttgtttgcttgtgaccctgctaacatccgtaaacattggattatcccttatccc |
29463544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 134 - 378
Target Start/End: Complemental strand, 15078172 - 15077932
Alignment:
| Q |
134 |
ctgccttcacaaaagcacctccctcgccgcggatacacgcaccataaccagttcgattgtaacttgtgaaaaaactagcatcaacattacaaatcatccc |
233 |
Q |
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|||||||||||||| |||| ||| |||||||||| ||||| |||||||||||||| || ||||| |||||| | ||||||||||||||| ||| || |
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| T |
15078172 |
ctgccttcacaaaaattactccttcgtcgcggatacatgcacc-taaccagttcgattataccttgtcaaaaaattggcatcaacattacaagtca--cc |
15078076 |
T |
|
| Q |
234 |
gtgcaccgctgtaccataatccctatcgtttctgctcactgttgcacggttgttctgctgcacattctgagctgatatccattccccaagcatcatttga |
333 |
Q |
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| T |
15078075 |
gtgcactgcattaccagacgccctattgtttctgctcactgtttcgcaattgctttgctacacattctgaactgataaccatt-cgcaagcatcatctga |
15077977 |
T |
|
| Q |
334 |
gccgaaacaacaatctgatgcgctgttgacgtcttctgattccac |
378 |
Q |
| |
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|| | ||| | ||| |||||||||| ||||| ||||||||||||| |
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| T |
15077976 |
gctgcaacgagaatttgatgcgctgatgacgccttctgattccac |
15077932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 435
Target Start/End: Complemental strand, 15078708 - 15078526
Alignment:
| Q |
257 |
tatcgtttctgctcactgttgcacggttgttctgctgcacattctgagctgatatccattcccc---aagcatcatttgagccgaaacaacaatctgatg |
353 |
Q |
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|||||||||||||||||||| | | ||| ||||||||||||||| | |||||| |||| | | ||||| ||| ||||||| ||| ||||||||||| |
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| T |
15078708 |
tatcgtttctgctcactgtttcgtgattgctctgctgcacattctaaactgataaacattgctctgcaagcaccatctgagccgcaacgacaatctgatg |
15078609 |
T |
|
| Q |
354 |
cgctgttgacgtcttctgattccacacgttttcg-ttttgctatgccaaatactccatattaacgacatgaccttactgacca |
435 |
Q |
| |
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| T |
15078608 |
cgctgatgacgccttctgagttcacacattttcgcgttatctatgccaactacttcatattagcgacaaaaccttactaacca |
15078526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 15078849 - 15078729
Alignment:
| Q |
89 |
cttcaacttcatggatttgtaactcagggcttaaccaacctgtcactgccttcacaaaagcacctccctcgccgcggatacacgcaccataaccagttcg |
188 |
Q |
| |
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||||| ||||||||||| | | ||||||||| ||||| ||||||| |||| |||||||| ||||| || |||||||||| ||||||||||||||||| |
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| T |
15078849 |
cttcaccttcatggattggcagctcagggctgaaccaccctgtcattgccctcacaaaaattcctccttcttcgcggatacatgcaccataaccagttcg |
15078750 |
T |
|
| Q |
189 |
attgtaacttgtgaaaaaact |
209 |
Q |
| |
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||| | ||||| |||||||| |
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| T |
15078749 |
attacaccttgtcaaaaaact |
15078729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 11988874 - 11988923
Alignment:
| Q |
465 |
ttacatttggctaccttgcatgaattgcatttttgctttgtttgcttgtg |
514 |
Q |
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||||||||||| ||||| || |||||||||||||||||||||| |||||| |
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| T |
11988874 |
ttacatttggcaaccttacacgaattgcatttttgctttgttttcttgtg |
11988923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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