View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20003_low_1 (Length: 959)
Name: NF20003_low_1
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 408 - 943
Target Start/End: Complemental strand, 42905569 - 42905033
Alignment:
| Q |
408 |
gaagggagtacattataattttggtaatagttgggttcctttttaggctttaaagaaagtgtttgagtgatgaggaatccatgtcgtccaaacactgaaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42905569 |
gaagggagtacattataattttggtaatagttgggttcctttttaggctttaaagaaagtgtttgagtgatgaggaatccatgtcgtccaaacactgaaa |
42905470 |
T |
|
| Q |
508 |
gacaaaaatgaggttgagagagaaaagcatagttagctttacgacccagaaaaggagatttcaaaacaacataaggctagcttaggaaattgcgtggtta |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42905469 |
gacaaaaatgaggttgagagagaaaagcatagttagctttacgacccagaaaaggagatttcaaaacaacataaggctagcttaggaaattgcgtggtta |
42905370 |
T |
|
| Q |
608 |
ctaacccaacctcatnnnnnnnnnnnnn------tagtatgtgttatgctatgcttttgtgtctatatttagtggtttgaagtttgattcagggtgcaac |
701 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42905369 |
ctaacccaacctcattctctctctctctctctcttagtatgtgttatgct-----tttgtgtctatatttagtggtttgaagtttgattcagggtgcaac |
42905275 |
T |
|
| Q |
702 |
cataaccccacaatattcttccttcttttcctcatctcactattattagccacaccttaatattttctacactagttttatgccaattcagtagggtttt |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42905274 |
cataaccccacaatattcttccttcttttcctcatctcactattattagccacaccttaatattttctacactagttttatgccaattcagtagggtttt |
42905175 |
T |
|
| Q |
802 |
ttcttgtggggctttcaaacccatttgattatgacctagctatagctacctcttctctccttccatagatctccctcaaaccacaatatatacctctcct |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42905174 |
ttcttgtggggctttcaaacccatttgattatgacctagctatagctacctcttctctccttccatagatctccctcaaaccacaatatatacctctcct |
42905075 |
T |
|
| Q |
902 |
tctctccatatctccttaacttactctcactctctacctact |
943 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42905074 |
tctctccatatctccttcacttactctcactctctacctact |
42905033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 42906015 - 42905814
Alignment:
| Q |
14 |
aatatagtactagtttggatgataaaataccctaaagagactcgaacacaagtacatgaatttgtttttatacaattaatgtgtgtgaatttcatattag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42906015 |
aatatagtactagtttggatgataaaataccctaaagagactcgaatacaagtacatgaatttgtttttatacaattaatgtgtgtgaatttcatattag |
42905916 |
T |
|
| Q |
114 |
aattgattttcaaatgtcaaaaacaattctagttaaacgtaaggaaaaacaatatttgaca-nnnnnnnnagaaatcaatttttgagattaaaagcaatt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
42905915 |
aattgattttcaaatgtcaaaaacaattctagttaaacgtaagtaaaaacaatatttgacatttttttttagaaatcaatttttgagattaaaagtaatt |
42905816 |
T |
|
| Q |
213 |
ct |
214 |
Q |
| |
|
|| |
|
|
| T |
42905815 |
ct |
42905814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 42905774 - 42905710
Alignment:
| Q |
220 |
atgcataatatattcaatcagaaatcactttatttacaacttatatttatttttagtcaaaatca |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42905774 |
atgcataatatattcaatcagaaatcactttatttacaacttatatttatttttagtcaaaatca |
42905710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University