View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_low_10 (Length: 572)

Name: NF20003_low_10
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_low_10
NF20003_low_10
[»] scaffold0002 (5 HSPs)
scaffold0002 (1-488)||(454205-454694)
scaffold0002 (373-444)||(404266-404339)
scaffold0002 (373-444)||(403827-403904)
scaffold0002 (509-558)||(454135-454184)
scaffold0002 (251-338)||(403640-403730)
[»] chr8 (8 HSPs)
chr8 (510-550)||(15286694-15286734)
chr8 (510-550)||(15467063-15467103)
chr8 (512-548)||(26673446-26673482)
chr8 (510-550)||(5457477-5457517)
chr8 (510-550)||(9799679-9799719)
chr8 (510-550)||(10334903-10334943)
chr8 (510-550)||(31712742-31712782)
chr8 (510-550)||(41996949-41996989)
[»] chr4 (8 HSPs)
chr4 (510-550)||(7242454-7242494)
chr4 (510-550)||(30416295-30416335)
chr4 (510-550)||(18502496-18502536)
chr4 (510-550)||(20887411-20887451)
chr4 (510-550)||(24100560-24100600)
chr4 (510-550)||(35338702-35338742)
chr4 (510-550)||(44374943-44374983)
chr4 (510-550)||(56236485-56236525)
[»] chr3 (8 HSPs)
chr3 (510-550)||(45664627-45664667)
chr3 (510-548)||(44984527-44984565)
chr3 (511-552)||(43897218-43897259)
chr3 (510-550)||(3457349-3457389)
chr3 (510-550)||(29776358-29776398)
chr3 (510-550)||(36540365-36540405)
chr3 (510-550)||(36623925-36623965)
chr3 (510-550)||(53155092-53155132)
[»] chr5 (8 HSPs)
chr5 (511-550)||(6012716-6012755)
chr5 (510-548)||(37425530-37425568)
chr5 (510-550)||(4726671-4726711)
chr5 (510-550)||(5378708-5378748)
chr5 (510-550)||(9034613-9034653)
chr5 (510-550)||(17218129-17218169)
chr5 (510-550)||(20187288-20187328)
chr5 (510-550)||(40775167-40775207)
[»] chr2 (10 HSPs)
chr2 (510-549)||(7639997-7640036)
chr2 (510-550)||(4878402-4878442)
chr2 (510-550)||(9689639-9689679)
chr2 (510-550)||(11550334-11550374)
chr2 (510-550)||(12890771-12890811)
chr2 (510-550)||(15920280-15920320)
chr2 (510-550)||(18141149-18141189)
chr2 (510-550)||(25622712-25622752)
chr2 (510-550)||(34962649-34962689)
chr2 (510-550)||(40125791-40125831)
[»] scaffold0007 (1 HSPs)
scaffold0007 (510-548)||(201731-201769)
[»] scaffold0121 (1 HSPs)
scaffold0121 (510-551)||(12904-12945)
[»] chr7 (9 HSPs)
chr7 (509-550)||(32312927-32312968)
chr7 (509-550)||(43806817-43806858)
chr7 (510-550)||(772849-772889)
chr7 (510-550)||(8319721-8319761)
chr7 (510-550)||(23732062-23732102)
chr7 (510-550)||(24319877-24319917)
chr7 (510-550)||(26017326-26017366)
chr7 (510-550)||(30992492-30992532)
chr7 (510-550)||(34893513-34893553)
[»] scaffold0056 (1 HSPs)
scaffold0056 (510-550)||(74591-74631)
[»] chr6 (2 HSPs)
chr6 (510-550)||(5545086-5545126)
chr6 (510-550)||(31705592-31705632)
[»] chr1 (6 HSPs)
chr1 (510-550)||(8893698-8893738)
chr1 (510-550)||(12967401-12967441)
chr1 (510-550)||(26771512-26771552)
chr1 (510-550)||(34659309-34659349)
chr1 (510-550)||(46589554-46589594)
chr1 (510-550)||(49652241-49652281)


Alignment Details
Target: scaffold0002 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 454694 - 454205
Alignment:
Q  1 ctgaagttcatctagcaaatcatcgtcgcctttccttctctgcactgcgctttgctgctcttgttctgcacttgtactcctgactctatgatccttgtca 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  454694 ctgaagttcatctagcaaatcatcatcacctttccttctctgcactgcgctttgctgctcttgttctgcacttgtactcttgactctatgatccttgtta 454595  T
Q  101 gaaaatcttcgtgagactgagattgaagatgtttgtggcatttcgaaggacaaagagggtgattgaagaagacaaagaaaaatgtgcgattcaaagaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  454594 gaaaatcttcgtgagactgagattgaagatgtttgtggcatttcgaaggacaaagagggtgattgaagaagacaaagaaaaatgtgtgattcaaagaaaa 454495  T
Q  201 agctgtgaaatgaagttgtgtgaacacatgaaagttttgtgaactccctctatcggtgtgatgagacactaaaattagagttgttaaaaaggctagccct 300  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  454494 agctgagaaatgaagttgtgtgaacacatgaaagttgtgtgaactccctctatcggtgtgatgagccactaaaattagagttgttaaataggctagccct 454395  T
Q  301 aacctctgtagtatgattgggctggcccgcttgttattatgcacacatatattatta-nnnnnnnnnnnnnnngttcattcactcattcacactatggtt 399  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||    
T  454394 aaccactgtagtatgattgggctggcccgcttgttattatgcacacatatattattatttttcaaatttttttgttcattcactcattcacactatggtt 454295  T
Q  400 ggagatttgaatatttaatagtcata--tttttttaacaaaattgagggtannnnnnnnnnatgaatcatgtcagttggtcatgcatttcg 488  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||          ||||||||||||| ||||||||||||||||    
T  454294 ggagatttgaatatttaatagtcatatttttttttaacaaaattgagggta-ttattttttatgaatcatgtcaattggtcatgcatttcg 454205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 444
Target Start/End: Original strand, 404266 - 404339
Alignment:
Q  373 gttcattcactcattcacactatggtt--ggagatttgaatatttaatagtcatatttttttaacaaaattgag 444  Q
    |||||||||||||||||||||||||||  | || |||||||||| |||| ||||||||||||||||||||||||    
T  404266 gttcattcactcattcacactatggttttgaagttttgaatattcaataatcatatttttttaacaaaattgag 404339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 444
Target Start/End: Original strand, 403827 - 403904
Alignment:
Q  373 gttcattcactcattcacactatgg--ttggagatttgaatatttaatagtcata----tttttttaacaaaattgag 444  Q
    |||||||||||||||||||||||||  |||||| ||||| |||| |||| |||||    |||||||||||||||||||    
T  403827 gttcattcactcattcacactatggttttggagttttgattattcaataatcatatatttttttttaacaaaattgag 403904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 454184 - 454135
Alignment:
Q  509 gaaaaataaatgatatccattaatttaaattgatagagtacaattcttct 558  Q
    ||||| ||||| |||||||||||||||||||||||||||| | |||||||    
T  454184 gaaaattaaattatatccattaatttaaattgatagagtatagttcttct 454135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 403640 - 403730
Alignment:
Q  251 tatcggtgtgatgagacactaaaattagagttgttaaaaaggctagccctaacctctgtagtatg---attgggctggcccgcttgttatt 338  Q
    |||||||||||||||    | ||||||||||||||||| |||||| | |||||| |||| |||||   |||||| ||| ||||||||||||    
T  403640 tatcggtgtgatgagctcatgaaattagagttgttaaataggctaactctaaccactgtggtatgaatattgggatggtccgcttgttatt 403730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 15286694 - 15286734
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  15286694 aaaaataaatgatattcattcatttaaattgatagagtaca 15286734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 15467063 - 15467103
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  15467063 aaaaataaatgatattcattcatttaaattgatagagtaca 15467103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 26673446 - 26673482
Alignment:
Q  512 aaataaatgatatccattaatttaaattgatagagta 548  Q
    |||||||||||||||||| ||||||||||||||||||    
T  26673446 aaataaatgatatccattcatttaaattgatagagta 26673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 5457517 - 5457477
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  5457517 aaaaataaatgatattcattcattcaaattgatagagtaca 5457477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 9799679 - 9799719
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  9799679 aaaaataaatgatattcattcattcaaattgatagagtaca 9799719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 10334943 - 10334903
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| |||||||||| ||| ||||||||||||||||    
T  10334943 aaaaataaacgatatccattcattcaaattgatagagtaca 10334903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 31712742 - 31712782
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  31712742 aaaaataaatgatattcattcattcaaattgatagagtaca 31712782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 41996989 - 41996949
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| |||||||||||| |||||||    
T  41996989 aaaaataaatgatattcattcatttaaattgatcgagtaca 41996949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 7242454 - 7242494
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  7242454 aaaaataaatgatattcatttatttaaattgatagagtaca 7242494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 30416295 - 30416335
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  30416295 aaaaataaatgatattcattcatttaaattgatagagtaca 30416335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 18502496 - 18502536
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  18502496 aaaaataaacgatattcattcatttaaattgatagagtaca 18502536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 20887411 - 20887451
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  20887411 aaaaataaacgatattcattcatttaaattgatagagtaca 20887451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 24100600 - 24100560
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  24100600 aaaaataaatgatattcattcattcaaattgatagagtaca 24100560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 35338742 - 35338702
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    |||||||||| |||| |||| ||||||||||||||||||||    
T  35338742 aaaaataaattatattcatttatttaaattgatagagtaca 35338702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 44374943 - 44374983
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  44374943 aaaaataaatgatattcattcattcaaattgatagagtaca 44374983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 56236485 - 56236525
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  56236485 aaaaataaatgatattcattcattcaaattgatagagtaca 56236525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 45664667 - 45664627
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  45664667 aaaaataaatgatattcattcatttaaattgatagagtaca 45664627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 548
Target Start/End: Original strand, 44984527 - 44984565
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagta 548  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  44984527 aaaaataaacgatatccattcatttaaattgatagagta 44984565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 552
Target Start/End: Original strand, 43897218 - 43897259
Alignment:
Q  511 aaaataaatgatatccattaatttaaattgatagagtacaat 552  Q
    ||||||||||||||| || |||| ||||||||||||||||||    
T  43897218 aaaataaatgatatctatcaattcaaattgatagagtacaat 43897259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 3457389 - 3457349
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  3457389 aaaaataaacgatattcattcatttaaattgatagagtaca 3457349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 29776358 - 29776398
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  29776358 aaaaataaatgatattcatttattcaaattgatagagtaca 29776398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 36540365 - 36540405
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    |||||||||||||||||||| ||| ||||||||| ||||||    
T  36540365 aaaaataaatgatatccattcattcaaattgatatagtaca 36540405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 36623925 - 36623965
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  36623925 aaaaataaatgatattcattcattcaaattgatagagtaca 36623965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 53155092 - 53155132
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  53155092 aaaaataaacgatattcattcatttaaattgatagagtaca 53155132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 550
Target Start/End: Original strand, 6012716 - 6012755
Alignment:
Q  511 aaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  6012716 aaaataaatgataatcattaatttaaattgatagagtaca 6012755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 548
Target Start/End: Complemental strand, 37425568 - 37425530
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagta 548  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  37425568 aaaaataaatgatattcattaattcaaattgatagagta 37425530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 4726671 - 4726711
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  4726671 aaaaataaatgatattcattcattcaaattgatagagtaca 4726711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 5378748 - 5378708
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  5378748 aaaaataaatgatattcattcattcaaattgatagagtaca 5378708  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 9034613 - 9034653
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  9034613 aaaaatatatgatatccattcattcaaattgatagagtaca 9034653  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 17218169 - 17218129
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  17218169 aaaaataaatgatattcattcattcaaattgatagagtaca 17218129  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 20187288 - 20187328
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||||||||| ||||||||||    
T  20187288 aaaaataaatgatattcatttatttaaattaatagagtaca 20187328  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 40775207 - 40775167
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  40775207 aaaaataaatgatattcattcattcaaattgatagagtaca 40775167  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 549
Target Start/End: Original strand, 7639997 - 7640036
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtac 549  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  7639997 aaaaataaatgatattcattcatttaaattgatagagtac 7640036  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 4878402 - 4878442
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  4878402 aaaaataaatgatattcattcattcaaattgatagagtaca 4878442  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 9689639 - 9689679
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  9689639 aaaaataaacgatatacattcatttaaattgatagagtaca 9689679  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 11550334 - 11550374
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  11550334 aaaaataaatgatattcattcattcaaattgatagagtaca 11550374  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 12890771 - 12890811
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||||||| ||||||||||||||||    
T  12890771 aaaaataaacgatattcattaattcaaattgatagagtaca 12890811  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 15920320 - 15920280
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  15920320 aaaaataaatgatattcattcattcaaattgatagagtaca 15920280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 18141149 - 18141189
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  18141149 aaaaataaatgatattcattcattcaaattgatagagtaca 18141189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 25622712 - 25622752
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  25622712 aaaaataaatgacattcattcatttaaattgatagagtaca 25622752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 34962649 - 34962689
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  34962649 aaaaataaatgatattcattcattcaaattgatagagtaca 34962689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 40125831 - 40125791
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  40125831 aaaaataaatgatattcattcattcaaattgatagagtaca 40125791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 548
Target Start/End: Original strand, 201731 - 201769
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagta 548  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  201731 aaaaataaatgatatacattcatttaaattgatagagta 201769  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 551
Target Start/End: Original strand, 12904 - 12945
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtacaa 551  Q
    ||||||||||||||| |||||||| ||||| |||||||||||    
T  12904 aaaaataaatgatattcattaattcaaattaatagagtacaa 12945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 32312968 - 32312927
Alignment:
Q  509 gaaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    |||||||||||||||| |||| ||| ||||||||||||||||    
T  32312968 gaaaaataaatgatattcattcattcaaattgatagagtaca 32312927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Original strand, 43806817 - 43806858
Alignment:
Q  509 gaaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||| |||| |||| ||||||||||||||||||||    
T  43806817 gaaaaataaattatattcattcatttaaattgatagagtaca 43806858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 772889 - 772849
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||| ||||||||| |||| ||||||||||||||||||||    
T  772889 aaaaacaaatgatattcattcatttaaattgatagagtaca 772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 8319761 - 8319721
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||| ||||||||| |||| ||||||||||||||||||||    
T  8319761 aaaaacaaatgatattcattcatttaaattgatagagtaca 8319721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 23732062 - 23732102
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||||||||||||| ||||||    
T  23732062 aaaaataaatgatattcattcatttaaattgataaagtaca 23732102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 24319877 - 24319917
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  24319877 aaaaataaacgatattcattcatttaaattgatagagtaca 24319917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 26017326 - 26017366
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  26017326 aaaaataaatgatattcattcattcaaattgatagagtaca 26017366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 30992492 - 30992532
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  30992492 aaaaataaatgatattcattcattcaaattgatagagtaca 30992532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 34893553 - 34893513
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  34893553 aaaaataaatgatattcattcattcaaattgatagagtaca 34893513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 74631 - 74591
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  74631 aaaaataaacgatattcatttatttaaattgatagagtaca 74591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 5545126 - 5545086
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  5545126 aaaaataaatgatattcattcattcaaattgatagagtaca 5545086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 31705632 - 31705592
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  31705632 aaaaataaacgatattcattcatttaaattgatagagtaca 31705592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 8893738 - 8893698
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  8893738 aaaaataaatgatattcattcattcaaattgatagagtaca 8893698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 12967401 - 12967441
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  12967401 aaaaataaatgatattcattcattcaaattgatagagtaca 12967441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 26771552 - 26771512
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  26771552 aaaaataaatgatattcattcattcaaattgatagagtaca 26771512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 34659309 - 34659349
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  34659309 aaaaataaatgatattcattcattcaaattgatagagtaca 34659349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 46589594 - 46589554
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  46589594 aaaaataaatgatattcattcattcaaattgatagagtaca 46589554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 49652281 - 49652241
Alignment:
Q  510 aaaaataaatgatatccattaatttaaattgatagagtaca 550  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  49652281 aaaaataaatgatattcattcattcaaattgatagagtaca 49652241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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