View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_16 (Length: 521)
Name: NF20003_low_16
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 274 - 507
Target Start/End: Complemental strand, 32464320 - 32464086
Alignment:
| Q |
274 |
ttttagcctccaccctcatattttatttagtccccctacccacccgagtcaacaagtcgccaacatggtcattgcttgcgtcttcaaacttgttgaaatc |
373 |
Q |
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| T |
32464320 |
ttttagcctccaccctcatattttatttagtccccctacccacccgagtcaacaagtcgccaacatggtcattgcttgcgtcttcaaacttgttgaaatc |
32464221 |
T |
|
| Q |
374 |
tctcgttgacgccaccttcgatatttcccttcttattcttctcttcatcacatatataaatacatcctaccat-ttttcctttacttcaaaataaacata |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32464220 |
tctcgttgacgccaccttcgatatttcccttcttattcttctcttcatcacatatataaatacatcctaccattttttcctttacttcaaaataaacata |
32464121 |
T |
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| Q |
473 |
ccctctttaatattttctcatcttccctttaatat |
507 |
Q |
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| T |
32464120 |
ccctctttaatattttctcatcttccctttaatat |
32464086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 32464736 - 32464557
Alignment:
| Q |
22 |
ccaacaaatacaggtatacaagataaagaatgtaaatcagccgtaaacccatttaacttctccatctcgcctatataaatactggaaaaaactaaatgct |
121 |
Q |
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| T |
32464736 |
ccaacaaataccggtatacaagataaagaatgtaaatcagccataaacccatttaactcctccatctcgcctatataaatactggaaaaaactaaatgct |
32464637 |
T |
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| Q |
122 |
aggactatagtcaatacatagcgatgcaaatgacctgatgatttatctttgatcccactcatgcttgaatcgagaattaa |
201 |
Q |
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| T |
32464636 |
aggactatagtcaatacatagcgatgcaaatgacctgatgatttatctttgatcccactcatgcttgaatcgagagttaa |
32464557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 32464396 - 32464366
Alignment:
| Q |
268 |
ctcccattttagcctccaccctcatatttta |
298 |
Q |
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| T |
32464396 |
ctcccattttagcctccaccctcatatttta |
32464366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 32464473 - 32464443
Alignment:
| Q |
268 |
ctcccattttagcctccaccctcatatttta |
298 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32464473 |
ctcccattttagcctccaccctcatatttta |
32464443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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