View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_18 (Length: 516)
Name: NF20003_low_18
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 104 - 499
Target Start/End: Original strand, 31794532 - 31794937
Alignment:
| Q |
104 |
ggggtcctagtaatccagagttcggtcaagaggtaagtaactaagtatagcctggccaagaactgttc-acctaggaatcgaactcgggttttccaaacg |
202 |
Q |
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| T |
31794532 |
ggggtcctagtaatccagagctcggtcaagaggtaagtaactaagtatagcctggccaagaactgttccacctagaaatcaaactcgggttttccaaacg |
31794631 |
T |
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| Q |
203 |
ataatacctatgatgttttaggttatgcaatttagaaaattaacttatctgagctagtcactaagaa---------tttttgtgagtgaagataaaaaga |
293 |
Q |
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| T |
31794632 |
ataatacctatgatgttttaggttatgcaatttagaaaattaacttatctgcgctagtcactaagaaactctagaatttttgtgagtgaagataaaaaga |
31794731 |
T |
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| Q |
294 |
actattataagcataattgactctacatttgaattggtcaatcctttgaatgtactctgattcaggacattactatctgtctaccacaactgtatagcac |
393 |
Q |
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| T |
31794732 |
actattataagcataattgactctacatttgaattggtcaatcctttgaatgtactctgattcaggacattactatctgtctaccacaactgtatagcac |
31794831 |
T |
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| Q |
394 |
gataaggaaccatcttgcattgcacttactgaaggtcaagataggaggtatataccccaacaactgaatctaaaacaatgatcacaatacaccaataaca |
493 |
Q |
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| T |
31794832 |
gataaggaaccatcttgcattgcacttactgaaggtcaagataggaggtatataccccaacaactgaatctaaaacagtgatcacaatacaccaataaca |
31794931 |
T |
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| Q |
494 |
aggaat |
499 |
Q |
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| T |
31794932 |
aggaat |
31794937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 494
Target Start/End: Original strand, 31800335 - 31800429
Alignment:
| Q |
400 |
gaaccatcttgcattgcacttactgaaggtcaagataggaggtatata-ccccaacaactgaatctaaaacaatgatcacaatacaccaataacaa |
494 |
Q |
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|||||||||||||||||||| | |||||||||||| ||| |||||||| ||||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
31800335 |
gaaccatcttgcattgcactaattgaaggtcaaga-agggggtatatatccccaacaataaaatcaaaaacagtgatcacaatacaccaataacaa |
31800429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 11368532 - 11368503
Alignment:
| Q |
113 |
gtaatccagagttcggtcaagaggtaagta |
142 |
Q |
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| T |
11368532 |
gtaatccagagttcggtcaagaggtaagta |
11368503 |
T |
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