View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20003_low_22 (Length: 470)
Name: NF20003_low_22
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_22 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 38219167 - 38218729
Alignment:
| Q |
13 |
aatatgctgattggagttatgataattagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgcta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38219167 |
aatatgctgattggagttatgataattagctccttggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgcta |
38219068 |
T |
|
| Q |
113 |
agatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
38219067 |
agatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaagagtatttatttggtagaattgatat |
38218968 |
T |
|
| Q |
213 |
gcaactcaaacttgttgctggaaattctgctggaactgttactgcttactacgtacgtacttcattttttattcctttctttacttcctcatttagcata |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38218967 |
gcaacttaaacttgttgctggaaattctgctggaactgttactgcttactacgtacgtacttcattttttattcctttctttacttcctcatttagcata |
38218868 |
T |
|
| Q |
313 |
tcatatattctttctattccaaaagcaactttaattaaaatagcttctacacgatatcaaaagcttt--tatgagaatatttttgttctgtttctgtttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
38218867 |
tcatatattctttctattccaaaagcaactttaattaaaatagcttcaacacgatatcaaaagcttttatatgagaatatttttgttctgtttctgtttt |
38218768 |
T |
|
| Q |
411 |
gcttcttgtgtattgtggtgctgcaagtaaataacgatg |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38218767 |
gcttcttgtgtattgtggtgctgcaagtaaataacgatg |
38218729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Complemental strand, 38214944 - 38214510
Alignment:
| Q |
15 |
tatgctgattggagttatgataattagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaag |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38214944 |
tatgctgattggagtcatgataattagctccttggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaag |
38214845 |
T |
|
| Q |
115 |
atattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38214844 |
atattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaagagtatttatttggtagaattgatatgc |
38214745 |
T |
|
| Q |
215 |
aactcaaacttgttgctggaaattctgctggaactgttactgcttactacgtacgtacttcattttttattcctttctttacttcctcatttagcatatc |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38214744 |
aacttaaacttgttgctggaaattctgctggaactgttactgcttactatgtatgtacttcattttttattcctttctttacttcctcatttagcatatc |
38214645 |
T |
|
| Q |
315 |
atatattctttctattccaaaagcaactttaattaaaatagcttctacacgatatcaaaagcttttatgagaatatttttgttctgtttctgttttgctt |
414 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38214644 |
atatattctttctattccgaaagcaactttaattaaaatagcttcaacacgatatcaaaagcttttatgagaatatttttgttctgtttctgttttgctt |
38214545 |
T |
|
| Q |
415 |
cttgtgtattgtggtgctgcaagtaaataacgatg |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214544 |
cttgtgtattgtggtgctgcaagtaaataacgatg |
38214510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 42990598 - 42990854
Alignment:
| Q |
15 |
tatgctgattggagttatgataattagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaag |
114 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| || |||||||||||| ||| || ||| ||||||| ||||||||||| ||||| || |||||||||||| |
|
|
| T |
42990598 |
tatgctgattggagctatgatagttagctccttgatagctacatgttgtgcaaatttctaccaagattttgatctaacatggggcgatcaccgtgctaag |
42990697 |
T |
|
| Q |
115 |
atattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgc |
214 |
Q |
| |
|
| |||||| |||||||| ||||| || |||||||| || ||| ||| ||||||||||| || |||||||||||||| ||||| |||||||||||||||| |
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|
| T |
42990698 |
acattcaacggtggtcagcttctttcactttctctcgacaaagtctccggctctggcttccagtccaagaaagagtacttattcggtagaattgatatgc |
42990797 |
T |
|
| Q |
215 |
aactcaaacttgttgctggaaattctgctggaactgttactgcttactacgtacgta |
271 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||| |
|
|
| T |
42990798 |
aactcaaactggttgctggaaactctgctggaaccgtcactgcttactatgtacgta |
42990854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 38 - 267
Target Start/End: Original strand, 35016214 - 35016443
Alignment:
| Q |
38 |
ttagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttct |
137 |
Q |
| |
|
||||||| ||||| ||||| ||| ||| || ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
35016214 |
ttagctctatggtggctacttgtgctggtagtttctaccaagactttgatctaacatggggtgataaccgtgctaagatattcaatggtggtcaacttct |
35016313 |
T |
|
| Q |
138 |
atctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaat |
237 |
Q |
| |
|
||| ||||| ||||| ||| ||||||||||||||| |||| |||| |||||| ||||||| |||||||||||||| || || ||||||||||| || |
|
|
| T |
35016314 |
atcactttcccttgacaaagtctctggctctggcttcaaatcaaagagagagtacctatttgggagaattgatatgcagcttaagcttgttgctggcaac |
35016413 |
T |
|
| Q |
238 |
tctgctggaactgttactgcttactacgta |
267 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
35016414 |
tctgctggcactgtcactgcttactacgta |
35016443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 53492319 - 53492500
Alignment:
| Q |
76 |
caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttc |
175 |
Q |
| |
|
|||||||||||| |||| ||||| || |||||||| ||| |||| |||| |||||||| |||| ||||||||||| ||||||| || ||||||| |
|
|
| T |
53492319 |
caagactttgatataacatggggggatggtcgtgctaaaatactcaacagtggccaacttcttactctatctcttgataagtcctctggttcaggctttc |
53492418 |
T |
|
| Q |
176 |
aatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctggaactgttactgc |
257 |
Q |
| |
|
||||||| || || || | ||||| | ||||||||||||||| ||||||||| |||| || |||||||| ||||| ||||| |
|
|
| T |
53492419 |
aatccaaaaatgaatacctttttggcaaaattgatatgcaacttaaacttgttcctggcaactctgctggcactgtcactgc |
53492500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 53494719 - 53494834
Alignment:
| Q |
148 |
cttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctggaa |
247 |
Q |
| |
|
||||| ||| ||||||| ||||| |||||||||||||| || ||| | ||||| | ||||||||||| ||||| ||||| ||||||| ||||| |||| |
|
|
| T |
53494719 |
cttgacaaagcctctggttctggatttcaatccaagaatgaatatctctttggcaacattgatatgcagctcaagcttgtacctggaaactctgcaggaa |
53494818 |
T |
|
| Q |
248 |
ctgttactgcttacta |
263 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
53494819 |
cggtcactgcttacta |
53494834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 53489692 - 53489558
Alignment:
| Q |
126 |
tggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaactt |
225 |
Q |
| |
|
|||||| ||||| |||| ||||| |||| ||||||||||||||||||||||||||| || | ||| | | ||| | ||||| |||||| | |||||| |
|
|
| T |
53489692 |
tggtcagcttcttactctgtctctagatagaacctctggctctggctttcaatccaataatcaatatctttatggaaagattgacatgcaaattaaactt |
53489593 |
T |
|
| Q |
226 |
gttgctggaaattctgctggaactgttactgctta |
260 |
Q |
| |
|
||| |||||||||| ||||| || || |||||||| |
|
|
| T |
53489592 |
gttcctggaaattcagctggcacagtcactgctta |
53489558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 53501885 - 53501955
Alignment:
| Q |
205 |
attgatatgcaactcaaacttgttgctggaaattctgctggaactgttactgcttactacgtacgtacttc |
275 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| ||||| ||||| || |||||| ||||||| |
|
|
| T |
53501885 |
attgatatgcaactcaaacttgtccctggaaactctgctggcactgtcactgcatattacgtaagtacttc |
53501955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 53498697 - 53498814
Alignment:
| Q |
140 |
ctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattc |
239 |
Q |
| |
|
|||| |||||||| ||| ||||||| || |||||||||||||| || || || |||||||| | |||||||||||| | || |||||| | ||||| || |
|
|
| T |
53498697 |
ctctatctcttgacaaagcctctggttcaggctttcaatccaaaaatgaatacttatttggcaaaattgatatgcagattaagcttgttccaggaaactc |
53498796 |
T |
|
| Q |
240 |
tgctggaactgttactgc |
257 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
53498797 |
tgctggcactgtcactgc |
53498814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 37188281 - 37188450
Alignment:
| Q |
76 |
caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttc |
175 |
Q |
| |
|
|||||||||||| |||| ||||| || |||||||| ||| |||| ||| |||||||| || | |||||||| ||| ||||||||||||| |||| |
|
|
| T |
37188281 |
caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc |
37188380 |
T |
|
| Q |
176 |
aatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
||||||| || || || | ||||| | |||||||||||| || ||||||||| |||| || |||||||| |
|
|
| T |
37188381 |
aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctgg |
37188450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 16941458 - 16941552
Alignment:
| Q |
151 |
gataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| | ||||| || ||||| | |||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
16941458 |
gataaatcttctggctctggctttcgttccaaatatgagtacttgtttgggaaaattgacatgcaactcaaacttgtagctggtaactctgctgg |
16941552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 17012123 - 17012217
Alignment:
| Q |
151 |
gataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| | ||||| || ||||| | |||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
17012123 |
gataaatcttctggctctggctttcgttccaaatatgagtacttgtttgggaaaattgacatgcaactcaaacttgtagctggtaactctgctgg |
17012217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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