View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_low_25 (Length: 423)

Name: NF20003_low_25
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_low_25
NF20003_low_25
[»] chr2 (5 HSPs)
chr2 (243-423)||(31136824-31137004)
chr2 (243-423)||(31152035-31152215)
chr2 (243-423)||(31130187-31130367)
chr2 (9-183)||(31136589-31136763)
chr2 (9-183)||(31152276-31152450)
[»] chr1 (3 HSPs)
chr1 (243-401)||(24484697-24484855)
chr1 (258-374)||(24468213-24468329)
chr1 (65-112)||(49632286-49632333)
[»] chr4 (2 HSPs)
chr4 (92-166)||(43049934-43050008)
chr4 (70-112)||(44449522-44449564)
[»] chr7 (3 HSPs)
chr7 (65-117)||(8147236-8147288)
chr7 (70-114)||(7392359-7392403)
chr7 (70-114)||(32834356-32834400)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 243 - 423
Target Start/End: Original strand, 31136824 - 31137004
Alignment:
Q  243 gtttaatctttctgttgtccatcttttggccattctcttaagagatgttgagcaaattctctaacatgtcattatttgtcacataatctttcccttctct 342  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  31136824 gtttaatctttgtgttgtccatcttttggccattctcttgagagatgttgagcaaattgtctaacatgtcattatttgtgacataatctttcccttctct 31136923  T
Q  343 taacttcaatctcttgctaatataagaatcaaggacatggaacaacttttccacataagctgctgaaactcctcttatacc 423  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  31136924 taacttcaatctcttgctaatataagaatcaaggatatggaacaatttttcaacataagctgctgaaactcctcttatacc 31137004  T

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Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 243 - 423
Target Start/End: Complemental strand, 31152215 - 31152035
Alignment:
Q  243 gtttaatctttctgttgtccatcttttggccattctcttaagagatgttgagcaaattctctaacatgtcattatttgtcacataatctttcccttctct 342  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  31152215 gtttaatctttgtgttgtccatcttttggccattctcttgagagatgttgagcaaattgtctaacatgtcattatttgtgacataatctttcccttctct 31152116  T
Q  343 taacttcaatctcttgctaatataagaatcaaggacatggaacaacttttccacataagctgctgaaactcctcttatacc 423  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  31152115 taacttcaatctcttgctaatataagaatcaaggatatggaacaatttttcaacataagctgctgaaactcctcttatacc 31152035  T

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Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 243 - 423
Target Start/End: Complemental strand, 31130367 - 31130187
Alignment:
Q  243 gtttaatctttctgttgtccatcttttggccattctcttaagagatgttgagcaaattctctaacatgtcattatttgtcacataatctttcccttctct 342  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  31130367 gtttaatctttgtgttgtccatcttttggccattctcttgagagatgttgagcaaattgtctaacatgtcattatttgtgacataatctttctcttctct 31130268  T
Q  343 taacttcaatctcttgctaatataagaatcaaggacatggaacaacttttccacataagctgctgaaactcctcttatacc 423  Q
    |||||||||||| |||| |||||| |||||||  |  || ||||||||||| |||||||  ||||||| ||||||||||||    
T  31130267 taacttcaatcttttgccaatatatgaatcaataatttgcaacaacttttcaacataagtagctgaaattcctcttatacc 31130187  T

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Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 31136589 - 31136763
Alignment:
Q  9 agcaaaggacatgcattgttatatagtnnnnnnncatataaggtcaagtagtctggtgtttccgtgagcgtaactcaattaggaggaacatgcattgtta 108  Q
    |||||||||||||||||||| ||||||       |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||| |||    
T  31136589 agcaaaggacatgcattgttgtatagtaaaaaaacatataaggtcaagtagtctggtgttcccgtgagtgtaactcaattgggaagaacatgcattttta 31136688  T
Q  109 tatgcaaggtttgaacaccagacatctcacttattcatcttgaaaatggtaaattttagtcactgcgttacttgg 183  Q
    |||||| ||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31136689 tatgcagggtttgaaccccagatacctcacttattcatcttgaaaatggtaaattctagtcactgcgttacttgg 31136763  T

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Target: chr2; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 31152450 - 31152276
Alignment:
Q  9 agcaaaggacatgcattgttatatagtnnnnnnncatataaggtcaagtagtctggtgtttccgtgagcgtaactcaattaggaggaacatgcattgtta 108  Q
    |||||||||||||||||||| ||||||       |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||| |||    
T  31152450 agcaaaggacatgcattgttgtatagtaaaaaaacatataaggtcaagtagtctggtgttcccgtgagtgtaactcaattgggaagaacatgcattttta 31152351  T
Q  109 tatgcaaggtttgaacaccagacatctcacttattcatcttgaaaatggtaaattttagtcactgcgttacttgg 183  Q
    |||||| ||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31152350 tatgcagggtttgaaccccagatacctcacttattcatcttgaaaatggtaaattctagtcactgcgttacttgg 31152276  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 243 - 401
Target Start/End: Original strand, 24484697 - 24484855
Alignment:
Q  243 gtttaatctttctgttgtccatcttttggccattctcttaagagatgttgagcaaattctctaacatgtcattatttgtcacataatctttcccttctct 342  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||| | ||||||||||||| ||| || ||||||| ||   |||||||    
T  24484697 gtttaatctttgtgttgtccatcttttgggcattctcttgagagatgttaagcaaagtatctaacatgtcatcattggtgacataattttcagcttctct 24484796  T
Q  343 taacttcaatctcttgctaatataagaatcaaggacatggaacaacttttccacataag 401  Q
    |||||||||||| ||| ||||| | ||||||| ||  || ||||||||||| |||||||    
T  24484797 taacttcaatcttttggtaataaaggaatcaatgatttgaaacaacttttcaacataag 24484855  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 24468213 - 24468329
Alignment:
Q  258 tgtccatcttttggccattctcttaagagatgttgagcaaattctctaacatgtcattatttgtcacataatctttcccttctcttaacttcaatctctt 357  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||  |||||| ||||||| ||   | | |||||||| |||||||||    
T  24468213 tgtccatcatttggccattctcttgagagatgttgagcaaattgtctaacatgtcaccatttgtgacataattttcttcatttcttaactccaatctctt 24468312  T
Q  358 gctaatataagaatcaa 374  Q
    | ||||||| |||||||    
T  24468313 ggtaatataggaatcaa 24468329  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 49632286 - 49632333
Alignment:
Q  65 tgtttccgtgagcgtaactcaattaggaggaacatgcattgttatatg 112  Q
    |||||||||||||||| ||||||| | ||| |||||||||||||||||    
T  49632286 tgtttccgtgagcgtagctcaattggcagggacatgcattgttatatg 49632333  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 43050008 - 43049934
Alignment:
Q  92 aggaacatgcattgttatatgcaaggtttgaacaccagacatctcacttattcatcttgaaaatggtaaatttta 166  Q
    ||||||||||||||||||||||| |||| |||| ||   |||| || ||||||||||| |||| |||||||||||    
T  43050008 aggaacatgcattgttatatgcagggttcgaacccccatcatcccatttattcatcttaaaaaaggtaaatttta 43049934  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 44449564 - 44449522
Alignment:
Q  70 ccgtgagcgtaactcaattaggaggaacatgcattgttatatg 112  Q
    |||||||| ||||||| |||| |||||||||||||||||||||    
T  44449564 ccgtgagcataactcagttagcaggaacatgcattgttatatg 44449522  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 8147288 - 8147236
Alignment:
Q  65 tgtttccgtgagcgtaactcaattaggaggaacatgcattgttatatgcaagg 117  Q
    ||||||||||||| || ||||||| | ||| ||||||||||||||||||||||    
T  8147288 tgtttccgtgagcatagctcaattggcagggacatgcattgttatatgcaagg 8147236  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 7392403 - 7392359
Alignment:
Q  70 ccgtgagcgtaactcaattaggaggaacatgcattgttatatgca 114  Q
    |||||||| || ||||||| | |||||||||||||||||||||||    
T  7392403 ccgtgagcatagctcaattggcaggaacatgcattgttatatgca 7392359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 32834400 - 32834356
Alignment:
Q  70 ccgtgagcgtaactcaattaggaggaacatgcattgttatatgca 114  Q
    |||||||| ||||||||||   |||||||||||||||||||||||    
T  32834400 ccgtgagcataactcaattgataggaacatgcattgttatatgca 32834356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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