View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_26 (Length: 414)
Name: NF20003_low_26
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 121 - 332
Target Start/End: Original strand, 1158162 - 1158377
Alignment:
| Q |
121 |
tgatgcctccaataaataataataatgtttctaaatttggttttatcatactaggaaatgttaatctctagttaagtttagttgtaacaactctcatgtt |
220 |
Q |
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| T |
1158162 |
tgatgcctccaataaataataataatgtttctgaatttggttttatcat--taggaaatgtcaatctctagttaagtttagttgtaacaactctcatgtt |
1158259 |
T |
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| Q |
221 |
gagtttttcaagagagaaactaatgtggttgctcacccatc------attgataaatgttgtttttggtaattaggttatagagaagaaaacaaatcatc |
314 |
Q |
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| T |
1158260 |
gagttttcaaagagagaagttaacgaggttgctctttcatcattaatattaataaatgttgtttttggtaattaggttatagagaagaaaacaaatcatc |
1158359 |
T |
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| Q |
315 |
taggtagtattaaccttc |
332 |
Q |
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| T |
1158360 |
taggtgggcttaaccttc |
1158377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 35425406 - 35425453
Alignment:
| Q |
199 |
tagttgtaacaactctcatgttgagtttttcaagagagaaactaatgt |
246 |
Q |
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| T |
35425406 |
tagttgtaaaaactctcatgttgaatttttcaagagagaagctaatgt |
35425453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 6955137 - 6955084
Alignment:
| Q |
202 |
ttgtaacaactctcatgttgagtttttcaagagagaaactaatgtggttgctca |
255 |
Q |
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| T |
6955137 |
ttgtaacaactcttatgtcgagttttctaagagagagactaatatggttgctca |
6955084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 51153783 - 51153739
Alignment:
| Q |
184 |
atctctagtta-agtttagttgtaacaactctcatgttgagtttt |
227 |
Q |
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| T |
51153783 |
atctctagttagagtttagttgtaagaactctaatgttgagtttt |
51153739 |
T |
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