View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20003_low_3 (Length: 732)
Name: NF20003_low_3
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_3 |
 | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 670; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 1 - 714
Target Start/End: Original strand, 6989170 - 6989882
Alignment:
| Q |
1 |
tgaggaggagcacagacttggggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaattcagttcttcgttaagtttgaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
6989170 |
tgaggaggaagacagacttggggcctcagtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaattcagttctttgttaagtta-aa |
6989268 |
T |
|
| Q |
101 |
cggtagtaacttttaattgatatttgtgacttgatttcatatttttaaaagcagtcctttttcactatctgcatgttacccttagttttctcgtttatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6989269 |
cggtagtaacttttaattgatatttgtgacttgctttcatatttttaaaagcagtcctttttcactatctgcatgttacccttagttttctcgtttatgt |
6989368 |
T |
|
| Q |
201 |
taagtgctgaaacactatggaatgtgcaattcttgtgaataaagatatctaacatgcattgtattgtggcagaaatttatcttggggatgctcacaaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6989369 |
taagtgctgaaacactatggaatgtgcaattcttgtgaataaagatatctaacatgcattgtattgtgccagaaatttatcttggggatgctcacaaacc |
6989468 |
T |
|
| Q |
301 |
tcggtagcatgacattagaccgcattcacaatatgctcaaggtattaatggttttacaccttcatgaatgtttggagacataacatgatcaacaagatta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6989469 |
tcggtagcatgacattagaccgcattcacaatatgctcaaggtattaatggttttacaccttcatgaatgtttggagacataacatgatcaacaagatta |
6989568 |
T |
|
| Q |
401 |
attatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctagtct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6989569 |
attatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctagtct |
6989668 |
T |
|
| Q |
501 |
ctgaggagaagttaaaatttcgggatggaacgtatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaaagg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6989669 |
ctgaggagaagttaaaatttcgggatggaacatatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaaagg |
6989768 |
T |
|
| Q |
601 |
cggcatgtttttcagaacctaaacatcttgaaattgtcatttttgtttgtttgcatagtccttaagccattgtacaaatttcaatcattgaattgtttgt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6989769 |
cggcatgtttttcagaacctaaacatcttgaaattgtcatttttgtttgtttgcatagtccttaagccattgtacaaatttcaatcattgaattgtttgt |
6989868 |
T |
|
| Q |
701 |
atagtccttaaccc |
714 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6989869 |
atagtccttaaccc |
6989882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 398 - 688
Target Start/End: Original strand, 7045772 - 7046063
Alignment:
| Q |
398 |
ttaattatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctag |
497 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
7045772 |
ttaattatctgattctttttatagctgcagatggtttgcattgctgatcccccttatgacaagtcactccaacaaccacaaagcattttatctagtctag |
7045871 |
T |
|
| Q |
498 |
tctctgaggagaagttaaaatttcgggatggaacgtatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaa |
597 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| ||| | ||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
7045872 |
tctctgaggagaagttagaacttcggtatggattgtacagtcttaagtagtgagctaatggaactaaaataatccttttggccat-agttttaagcaaaa |
7045970 |
T |
|
| Q |
598 |
aggcggc--atgtttttcagaacctaaacatcttgaaattgtcatttttgtttgtttgcatagtccttaagccattgtacaaatttcaatcat |
688 |
Q |
| |
|
||| | ||||| |||||||||| || ||||||||| | ||||||||||||||||| ||||||||||| | ||| ||||||||||||||| |
|
|
| T |
7045971 |
aggatacatatgttcttcagaacctgaatatcttgaaagtctcatttttgtttgtttgtatagtccttaaccgattccacaaatttcaatcat |
7046063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 564 - 688
Target Start/End: Original strand, 7000067 - 7000192
Alignment:
| Q |
564 |
aaataatccttttggccataagttttaagcaaaaaggcggc--atgtttttcagaacctaaacatcttgaaattgtcatttttgtttgtttgcatagtcc |
661 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||| || ||||||||| | | ||||||||||||||| ||||||| |
|
|
| T |
7000067 |
aaataatccttttggccat-agttttaagcaaaaaggatacatatgttcttcagaacctgaatatcttgaaagtctaatttttgtttgtttgtatagtcc |
7000165 |
T |
|
| Q |
662 |
ttaagccattgtacaaatttcaatcat |
688 |
Q |
| |
|
|||| ||||| ||||||||||||||| |
|
|
| T |
7000166 |
ttaacccattccacaaatttcaatcat |
7000192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 647 - 694
Target Start/End: Original strand, 6989861 - 6989908
Alignment:
| Q |
647 |
ttgtttgcatagtccttaagccattgtacaaatttcaatcattgaatt |
694 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
6989861 |
ttgtttgtatagtccttaacccactgtacaaatttcaatcattgaatt |
6989908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 150; Significance: 6e-79; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 398 - 688
Target Start/End: Original strand, 14605 - 14896
Alignment:
| Q |
398 |
ttaattatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctag |
497 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
14605 |
ttaattatctgattctttttatagctgcagatggtttgcattgctgatcccccttatgacaagtcactccaacaaccacaaagcattttatctagtctag |
14704 |
T |
|
| Q |
498 |
tctctgaggagaagttaaaatttcgggatggaacgtatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaa |
597 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| ||| | ||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
14705 |
tctctgaggagaagttagaacttcggtatggattgtacagtcttaagtagtgagctaatggaactaaaataatccttttggccat-agttttaagcaaaa |
14803 |
T |
|
| Q |
598 |
aggcggc--atgtttttcagaacctaaacatcttgaaattgtcatttttgtttgtttgcatagtccttaagccattgtacaaatttcaatcat |
688 |
Q |
| |
|
||| | ||||| |||||||||| || ||||||||| | ||||||||||||||||| ||||||||||| | ||| ||||||||||||||| |
|
|
| T |
14804 |
aggatacatatgttcttcagaacctgaatatcttgaaagtctcatttttgtttgtttgtatagtccttaaccgattccacaaatttcaatcat |
14896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 425 - 664
Target Start/End: Complemental strand, 31958207 - 31957968
Alignment:
| Q |
425 |
cagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctagtctctgaggagaagttaaaatttcggg |
524 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||||| |
|
|
| T |
31958207 |
cagatgttttgcattgctgatcccccttatgacaaatcactccaacaactacaaagctttttatctggtctagtctctgaggaaaagttagaacttcggg |
31958108 |
T |
|
| Q |
525 |
atggaacgtatattcta---aagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaaaggcg--gcatgtttttcagaacc |
619 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31958107 |
atggagtgtactttctaaagaagtagtgagcttatggaactatggtcatccttttggccataagttttaagcaaaaaggtgaaatatgtttttcag---- |
31958012 |
T |
|
| Q |
620 |
taaacatcttgaaattgtcatttttg-tttgtttgcatagtcctta |
664 |
Q |
| |
|
||| ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
31958011 |
--aacttcttgaaattgccatttttgttttgtttgcatagtcctta |
31957968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 380 - 618
Target Start/End: Complemental strand, 31895224 - 31894976
Alignment:
| Q |
380 |
ataacatgatcaacaagattaattatgtgattct-------ttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaa |
472 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || || ||| |||||||||| ||||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
31895224 |
ataacatgatcaacaagattacttacgtgatactcagtcgtttctattaccgcagatgttttgcattgctgatcccccttatgataaatcacttcatcaa |
31895125 |
T |
|
| Q |
473 |
ttacaaagctttttatctggtctagtctctgaggagaagttaaaatttcgggatggaacgtatattcta---aagtagtgagcttatggaactgaaataa |
569 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| || ||||||||||| ||| ||||| |||||| | |||||||||||| | | |
|
|
| T |
31895124 |
ctacaaagctttttatctgggctagtatctgaggagaagttagaacttcgggatggagtgtactttctaaagaagtagcggccttatggaactgtggtca |
31895025 |
T |
|
| Q |
570 |
tccttttggccataagttttaagcaaaaaggcggcatgtttttcagaac |
618 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||||||| |||||| |
|
|
| T |
31895024 |
tccttttggccacaagttttaagcaaaaaggtgaaatgttttacagaac |
31894976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 31958422 - 31958297
Alignment:
| Q |
236 |
tgaataaagatatctaacatgcattgtattgtggcagaaatttatcttggggatgctcacaaacctcggtagcatgacattagaccgcattcacaatatg |
335 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| |
|
|
| T |
31958422 |
tgaataaagatatctaacatgtattgttttatggcagaaatttatcttggggatgctcacaaactttggtagcatggcattagatcgcattcacaatact |
31958323 |
T |
|
| Q |
336 |
ctcaaggtattaatggttttacacct |
361 |
Q |
| |
|
||||||||| |||||||||| ||||| |
|
|
| T |
31958322 |
ctcaaggtaataatggtttttcacct |
31958297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 236 - 360
Target Start/End: Complemental strand, 31895407 - 31895283
Alignment:
| Q |
236 |
tgaataaagatatctaacatgcattgtattgtggcagaaatttatcttggggatgctcacaaacctcggtagcatgacattagaccgcattcacaatatg |
335 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
31895407 |
tgaataaagatatctaacatgtattgttttatggcagaaatttatcttagggatgctcacaaactttggtagcatgacattagatcgcattcacaatact |
31895308 |
T |
|
| Q |
336 |
ctcaaggtattaatggttttacacc |
360 |
Q |
| |
|
||||||||| ||||||||| |||| |
|
|
| T |
31895307 |
ctcaaggtaagaatggtttttcacc |
31895283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 31895898 - 31895842
Alignment:
| Q |
22 |
ggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaat |
78 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31895898 |
ggcctcggtagaaaatcaacttcggaaggagatgactgtgtatgaggtacatgaaat |
31895842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 31958877 - 31958821
Alignment:
| Q |
22 |
ggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaat |
78 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31958877 |
ggcctcggtagaaaatcaacttcggaaggagatgactgtgtatgaggtacatgaaat |
31958821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University