View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_34 (Length: 384)
Name: NF20003_low_34
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 47156600 - 47156975
Alignment:
| Q |
1 |
tatgtaatgtaatttcatatttctttaaatgattatatattggagaaattattggcccatatcattactaaagaaagttccttttcagtgaaaattaaat |
100 |
Q |
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| T |
47156600 |
tatgtaatgtaatttcatatttctttaaatgattatatattggagaaattattggcccatatcattactaaagaaagttccttttcagtgaaaattaaat |
47156699 |
T |
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| Q |
101 |
gaaaaaggatgactgtaaatataaataataaatgttacatacttcaacataacattgaataccagaaaaaagaaagaatctaggactataaaattgaatt |
200 |
Q |
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| T |
47156700 |
gaaaaaggatggctgtaaatataaataataaatgttacatacttcaacataacattgaataccagaaaaaagaaagaatctaggactataaaattgaatt |
47156799 |
T |
|
| Q |
201 |
gaaatggagtggcccctatatactgaatcagaatctgattttgaagcagaattaaagtgacgagacaattcgaattgtcacgttgcagtagggaggagat |
300 |
Q |
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| T |
47156800 |
gaaatggagtggcccctatatactgaatcaaaatctgattttgaagcagaattaaagtgacgagacaattcgaattgtcacgttgcagtagggaggagat |
47156899 |
T |
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| Q |
301 |
atacatatataacaccttcaatattgcgtgattgttataatggtaaagaaggacaaggacccgtctattctctgct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47156900 |
atacatatataacaccttcaatattgcgtgattgttataatggtaaagaaggacaaggacccgtctattctctgct |
47156975 |
T |
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