View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_39 (Length: 349)
Name: NF20003_low_39
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 6e-93; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 13356685 - 13356936
Alignment:
| Q |
1 |
atattttcatccattttgcgataaatgacatggtactgtgaatcaca---gcatttaaaatgttttgtttaacttaattttaaggttttctctaattaaa |
97 |
Q |
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||||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| || ||||||| ||| |
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| T |
13356685 |
atattttcatcaattttgtgataaatgacatggttctgtgaatcacacatgcatttaaaatgttttgtttagcttaatttttagattttctc----caaa |
13356780 |
T |
|
| Q |
98 |
gctcgttaaataagattttaattataagtcattttaagcacaaaggttaatccctccacatatttatcaatgtgtttttaattataaatgtgcaattctc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||| | ||||||| |
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| T |
13356781 |
gctcgttaaataagattttaattataagtcattttaagcacaaaggtcaatccctcgacatacttatcaatgtgttttgaattataaatgagaaattctc |
13356880 |
T |
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| Q |
198 |
aagcaattgaagctgccttctggggagatttgcctctaggtgtacaaatcgtgtca |
253 |
Q |
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| T |
13356881 |
aagcaattgaagctgccttctggggagatttgcctctaggtgtacaaatcgtgtca |
13356936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13351461 - 13351693
Alignment:
| Q |
1 |
atattttcatccattttgcgataaatgacatggtactgtgaatcaca---gcatttaaaatgttttgtttaacttaattttaaggttttctctaattaaa |
97 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| | || ||||||||||||||||||||| |||||||||||| ||||| | |||| |
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| T |
13351461 |
atattttcatccattttgtaataaatgacatggtacggtgaaccgcacatgcatttaaaatgttttgtttagcttaattttaagattttc-cactctaaa |
13351559 |
T |
|
| Q |
98 |
gctcgttaaataagattttaattataagtcattttaagcacaaaggttaatccctccacatatttatcaatgtgtttttaattataaatgtgcaattctc |
197 |
Q |
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| T |
13351560 |
cctcgttaaataagattttaattataagactttttaaacacaaaggttaatccctccacatacttatcaatgtgttttgaattatagatgtgtaatgctc |
13351659 |
T |
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| Q |
198 |
aagcaattgaagctgccttctggggagatttgcc |
231 |
Q |
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| T |
13351660 |
aagcaattgaaactgccttcgggggagatttgcc |
13351693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 342
Target Start/End: Complemental strand, 13370993 - 13370887
Alignment:
| Q |
235 |
aggtgtacaaatcgtgtcacaaatctcaatcctaatgtaagtacatttgattgtaacattttttattatgcaggaaatatatcttccatttattttaata |
334 |
Q |
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|||||||||| || ||||||||||||||||||| ||||||||| |||||||| |||| ||||| ||| |||| ||||||||||| || ||||| |||||| |
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| T |
13370993 |
aggtgtacaattcttgtcacaaatctcaatcctgatgtaagta-atttgattctaacctttttcattctgcaagaaatatatctcccctttatattaata |
13370895 |
T |
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| Q |
335 |
ttttcttc |
342 |
Q |
| |
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|||||||| |
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| T |
13370894 |
ttttcttc |
13370887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 13351719 - 13351819
Alignment:
| Q |
235 |
aggtgtacaaatcgtgtcacaaatctcaatcctaatgtaagtacatttgattgtaacattttttattatgcaggaaatatatct-tccatttattttaat |
333 |
Q |
| |
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|||||||||| || ||||||||||||||||||| ||||||||||||||| |||| |||||||| ||| |||| |||| |||||| |||| |||||||||| |
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| T |
13351719 |
aggtgtacaattcttgtcacaaatctcaatcctgatgtaagtacatttggttgtgacatttttcattctgcaagaaagatatctatcca-ttattttaat |
13351817 |
T |
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| Q |
334 |
at |
335 |
Q |
| |
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|| |
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| T |
13351818 |
at |
13351819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 13371237 - 13371080
Alignment:
| Q |
1 |
atattttcatccattttgcgataaatgacatggtactgtgaatcaca---gcatttaaaatgttttgtttaacttaattttaaggttttctctaattaaa |
97 |
Q |
| |
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|||||||||||| |||| |||||||||| | |||||||||| ||| |||||||||||||||| || |||||||||||| ||||| | | ||| |
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| T |
13371237 |
atattttcatcctatttgtgataaatgacgtagtactgtgaactacacatgcatttaaaatgtttt---tagcttaattttaagattttccattct-aaa |
13371142 |
T |
|
| Q |
98 |
gctcgttaaataagattttaattataagtcattttaagcacaaaggttaatccctccacata |
159 |
Q |
| |
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|||||||||||| |||||||||| | || | |||||| |||||||||||||||||||||||| |
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| T |
13371141 |
gctcgttaaataggattttaattgttagacgttttaaacacaaaggttaatccctccacata |
13371080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 13318472 - 13318535
Alignment:
| Q |
170 |
tgtttttaattataaatgtgcaattctcaagcaattgaagctgccttctggggagatttgcctc |
233 |
Q |
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|||||| ||||||| ||| | ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
13318472 |
tgttttgaattatagatgggaaatgctcaagcaattgaagctgccttcgggggagatttgcctc |
13318535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 13371073 - 13371033
Alignment:
| Q |
177 |
aattataaatgtgcaattctcaagcaattgaagctgccttc |
217 |
Q |
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||||||| ||| ||||| ||||||||||||||||||||||| |
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| T |
13371073 |
aattatagatgggcaatgctcaagcaattgaagctgccttc |
13371033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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