View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_43 (Length: 338)
Name: NF20003_low_43
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 128 - 281
Target Start/End: Original strand, 30968131 - 30968284
Alignment:
| Q |
128 |
ctgattaagaacaacattagtgtcgagaacaagaatagtggaaggagaagcactgagtctagcagcagaagtgtcacagacagtgcaagacggagctccg |
227 |
Q |
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| T |
30968131 |
ctgattaagaacaacattagtgtcgagaacaagaatagtggaaggagaagcactgagtctagcaccagaagtgttacagatagtgcaagacggagctccg |
30968230 |
T |
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| Q |
228 |
caatatatatcatcacgcaagtagtgttcccttacttgctgcaaccatacatat |
281 |
Q |
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| T |
30968231 |
caatatatatcatcacgcaagtagtgttcccttacttgctgcaaccatacatat |
30968284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30968004 - 30968036
Alignment:
| Q |
1 |
tacaacaacatcatcaatagcgggattctccag |
33 |
Q |
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| T |
30968004 |
tacaacaacatcatcaatagcgggattctccag |
30968036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 17825325 - 17825188
Alignment:
| Q |
128 |
ctgattaagaacaacattagtgtcgagaacaagaatagtggaaggagaagcactgagtctagcagcagaagtgtcacagacagtgcaagacggagctccg |
227 |
Q |
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| T |
17825325 |
ctgattaagaacaacattagtgtcgagaacaagcatagtagaaggagaagcaccgagtctagcaccataagtgttacagatagtgcaagacggagcgccg |
17825226 |
T |
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| Q |
228 |
caatatatatcatcacgcaagtagtgttcccttacttg |
265 |
Q |
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| T |
17825225 |
caatatatatcatcacgcaagtagtgttcccttacttg |
17825188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17825463 - 17825431
Alignment:
| Q |
1 |
tacaacaacatcatcaatagcgggattctccag |
33 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
17825463 |
tacaacaacatcatcaattgcgggattctccag |
17825431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 26458665 - 26458699
Alignment:
| Q |
247 |
agtagtgttcccttacttgctgcaaccatacatat |
281 |
Q |
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| T |
26458665 |
agtagtgttcccttacttgctgcaaccatacatat |
26458699 |
T |
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