View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_45 (Length: 333)
Name: NF20003_low_45
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 44991054 - 44991375
Alignment:
| Q |
1 |
tcacagtgaacatgtctgcttcagtgttgctcctttcaacttgctttcgcgcggtacaacctttggaactgctacatctgtagtagttcctaataataca |
100 |
Q |
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| T |
44991054 |
tcacagtgaacatgtctgcttcagtgttgctcctttcaacttgctttcgcgcggtacaacctttggaactgctacatctgtagtagttcctaataataca |
44991153 |
T |
|
| Q |
101 |
acaacaatttataaggttgttagtatttcctgagaaattgatggttcaataacacttaaagctgaaatgaatttgttatagtaatcgatgttttaaaatt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44991154 |
acaacaaattataaggttgttagtatttcctgagaaattgatggttcaatagcacttaaagctgaaatgaatttgttatagtaatcgatgttttaaaatt |
44991253 |
T |
|
| Q |
201 |
tttggtgaagacgtagtgtcaagactttcggggagaagctagcttagtatcaaattaaattttattgaagttatatgtgtaccttggatatggagaacct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44991254 |
tttggtgaagacgtagtgtcaagactttcggggagaagctagcgtagtatcaaattatattttattgaagttatatgtgtaccttggatatggagaacct |
44991353 |
T |
|
| Q |
301 |
ttaatgggtttttgtccatatt |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
44991354 |
ttaatgggtttttgtccatatt |
44991375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 28271363 - 28271322
Alignment:
| Q |
281 |
accttggatatggagaacctttaatgggtttttgtccatatt |
322 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
28271363 |
accttggatgtggagatcctttaatgggtttttgtccatatt |
28271322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 28256533 - 28256492
Alignment:
| Q |
281 |
accttggatatggagaacctttaatgggtttttgtccatatt |
322 |
Q |
| |
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||||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
28256533 |
accttggatgtggagaccctttaatgtgtttttgtccatatt |
28256492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 29619592 - 29619551
Alignment:
| Q |
281 |
accttggatatggagaacctttaatgggtttttgtccatatt |
322 |
Q |
| |
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||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
29619592 |
accttggatgtggagaccctttaatgggtttttctccatatt |
29619551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 8776843 - 8776884
Alignment:
| Q |
281 |
accttggatatggagaacctttaatgggtttttgtccatatt |
322 |
Q |
| |
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||||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
8776843 |
accttggatgtggagaccctttaatgggtttttgcccatatt |
8776884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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