View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_49 (Length: 324)
Name: NF20003_low_49
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 9681080 - 9681385
Alignment:
| Q |
5 |
cagttgctctgcggtcagagacgtatgcacaatggactgaacacaatgtgacatttaattaaaagtgacgataagaaatgaaaacaaaaaagattttctg |
104 |
Q |
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| T |
9681080 |
cagttgctctgcagtcagagacgtatgcacaatggactgaacacaatgtgacatttaattaaaagtgacgataagaaatgaaaacaaaaaag-ttttctg |
9681178 |
T |
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| Q |
105 |
aaaccaaataggtggtaacattttcagttaaacagacacattaaatttataacattctgcaacacctgttttgtacttctccagctgtctttgagtttgt |
204 |
Q |
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| T |
9681179 |
aaaccaaataggtggtaacattttcagttaaacagacacattaaatttataacattctgcaacacctattttgtacttctccagctgtctttgagtttgt |
9681278 |
T |
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| Q |
205 |
tagttagtacctctcttatatggaaatggtccaataacatccataaatatctttggttcctattggtggtccttcattggtagatggtatattaatttcc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9681279 |
tagttagtacctctcttatatggaaatggtccaataacatccacaaatatctttggttcctattggtggtccttcattggtagatggtatattaatttcc |
9681378 |
T |
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| Q |
305 |
aatccct |
311 |
Q |
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||||||| |
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| T |
9681379 |
aatccct |
9681385 |
T |
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