View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_53 (Length: 301)
Name: NF20003_low_53
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 41248870 - 41249149
Alignment:
| Q |
1 |
tttattcaatgacatatgatcatatataattgaatatgaatgtatatttaaccctatgtctacacattatcatctatacatggcttaaattagatctctt |
100 |
Q |
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| T |
41248870 |
tttattcaatgacatatgatcatatatagttgaatatgaatgtatatttaaccctatgtctacacattatcatctatacatggcttaaattagatctctt |
41248969 |
T |
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| Q |
101 |
ggataacaaagcgaggtttgacacttgctaaatcaaataatcatttttggagttcaagtcgaaaaaagcatcaaacatagacttaaaccaaagcttatat |
200 |
Q |
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| T |
41248970 |
ggataacaaagcgaggtttgacacttgctaaatcaaataatcatttttggagttcaagtcaaaaaaagcat----catagacttaaaccaaagcttatat |
41249065 |
T |
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| Q |
201 |
tgaataatattgtataccaccggtcatgtcaatagtaacacatcaaattcctaactacctatatcaaatttcggttgatgtatt |
284 |
Q |
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| T |
41249066 |
tgaataatattgtatacaaccggtcatgtcaatagtaacacatcaaatttctagctacctatatcaaatttcggttgatgtatt |
41249149 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 44985002 - 44984918
Alignment:
| Q |
124 |
cttgctaaatcaaataatcatttttggagttcaagtcgaaaaaagcatcaaacatagacttaaaccaaagcttatattgaataat |
208 |
Q |
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| T |
44985002 |
cttgctaagtcaaataatcattttcgggttgcacgtcggaaaaagtattaaacatagaattaaaccaaagcttatattgaataat |
44984918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 48822871 - 48822943
Alignment:
| Q |
129 |
taaatcaaataatcatttttggagttcaagtcgaaaaaagcatcaaacatagacttaaaccaaagcttatatt |
201 |
Q |
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| T |
48822871 |
taaatcaaataatcattttcggattgcacgtcggagaaagcattaattatagaattaaaccaaagcttatatt |
48822943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 1819248 - 1819157
Alignment:
| Q |
116 |
gtttgacacttgctaaatcaaataatcatttttggagttcaagtcgaaaaaagcatcaaacatagacttaaaccaaagcttatattgaataa |
207 |
Q |
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|||| |||||| |||||||||||||||||||||||| | || |||| ||||||||| || ||| | |||||||||| ||| ||||||||| |
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| T |
1819248 |
gtttcacactttctaaatcaaataatcatttttggattgcacgtcggaaaaagcattaagtatatagctaaaccaaagattacattgaataa |
1819157 |
T |
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