View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_57 (Length: 282)
Name: NF20003_low_57
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 8671908 - 8671648
Alignment:
| Q |
1 |
taacagttaggatgcaatataaggtggtcatggggacctggaatacaaggaagtgtaaatgaacgcactggtctcttggtcttggtctctcttgtcaagg |
100 |
Q |
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| T |
8671908 |
taacagttaggatgcaatataaggtggtcatggggacctggaatacaaggaagtgtaaatgaacgcgctggtctcttggtcttggtctctcttgtcaagg |
8671809 |
T |
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| Q |
101 |
ccatatgcaatacaaggacaatgcgctggttatcatataaggtggtatatcgatttgtctttgtgacaggtatggaagtgtttcttggaatcaccacact |
200 |
Q |
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| T |
8671808 |
ccatatgcaatacaaggacaatgcgctggttatcatataaggtggtatatcgatttgtctttgtgacaggtatggaagtgtttcttggaatcaccacact |
8671709 |
T |
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| Q |
201 |
catgatatgttcaatccttgcagcaataccaagtgacaatggcgtaacatctcgtagcacc |
261 |
Q |
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| T |
8671708 |
catgatatgttcaatccttgcagcaataccaagtgacaatggcgtaacatctcgtagcacc |
8671648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 8666893 - 8667037
Alignment:
| Q |
117 |
gacaatgcgctggttatcatataaggtggtatatcgatttgtctttgtgacaggtatggaagtgtttcttggaatcaccacactcatgatatgttcaatc |
216 |
Q |
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| T |
8666893 |
gacaaggcactggttatcataaagggtggaatatcgacttgtcttcttgacaggtatggaagtgtttctaggaatcaccacactcatgatatgttcaata |
8666992 |
T |
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| Q |
217 |
cttgcagcaataccaagtgacaatggcgtaacatctcgtagcacc |
261 |
Q |
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| T |
8666993 |
cttacagaaataccaagtgacaaaggggtcacatctcgtagcacc |
8667037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 10495021 - 10494924
Alignment:
| Q |
164 |
tgacaggtatggaagtgtttcttggaatcaccacactcatgatatgttcaatccttgcagcaataccaagtgacaatggcgtaacatctcgtagcacc |
261 |
Q |
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||||||| ||||||||||| || |||||||||||| |||||||| |||| | || | ||||||||||||||||||| |||||||||||||||||| |
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| T |
10495021 |
tgacagggatggaagtgttcctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcacc |
10494924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 13334012 - 13333918
Alignment:
| Q |
164 |
tgacaggtatggaagtgtttcttggaatcaccacactcatgatatgttca-atccttgcagcaataccaagtgacaatggcgtaacatctcgtagcacc |
261 |
Q |
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| T |
13334012 |
tgacagggatggaagtgttcctaggaatcacaacattcatgatatgttcatatact----gaaataccaagtgataatgggataacatctcgtagcacc |
13333918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 8569835 - 8569879
Alignment:
| Q |
164 |
tgacaggtatggaagtgtttcttggaatcaccacactcatgatat |
208 |
Q |
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| T |
8569835 |
tgacaggaatggaagtgttccttggaatcaccacactcataatat |
8569879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 9336585 - 9336441
Alignment:
| Q |
117 |
gacaatgcgctggttatcatataaggtggtatatcgatttgtctttgtgacaggtatggaagtgtttcttggaatcaccacactcatgatatgttcaatc |
216 |
Q |
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|||||||| |||||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| | |
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| T |
9336585 |
gacaatgcactggttatcataaagggtgaaatatccatttgtcttcttgacaggtatggaagtgtttctaggaatcaccacactcatgatattttcctta |
9336486 |
T |
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| Q |
217 |
cttgcagcaataccaagtgacaatggcgtaacatctcgtagcacc |
261 |
Q |
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|| || ||||||||||||||||| |||||||||||||||||| |
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| T |
9336485 |
tatgttgcgataccaagtgacaatggggtaacatctcgtagcacc |
9336441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 14702914 - 14702975
Alignment:
| Q |
146 |
tatatcgatttgtctttgtgacaggtatggaagtgtttcttggaatcaccacactcatgata |
207 |
Q |
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| T |
14702914 |
tatatcgttttgtctttttgacaggaatgcaagtgttcctaggaatcaccacatccatgata |
14702975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 16658179 - 16658114
Alignment:
| Q |
149 |
atcgatttgtctttgtgacaggtatggaagtgtttcttggaatcaccacactcatgatatgttcaa |
214 |
Q |
| |
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|||| ||| |||||| ||||||||||||||||| || |||||||| |||||||||| ||| |||| |
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| T |
16658179 |
atcgttttatctttgccacaggtatggaagtgttcctaggaatcacaacactcatgacatgatcaa |
16658114 |
T |
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