View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_low_59 (Length: 278)

Name: NF20003_low_59
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_low_59
NF20003_low_59
[»] chr8 (6 HSPs)
chr8 (139-270)||(40109799-40109930)
chr8 (18-78)||(40109993-40110052)
chr8 (202-266)||(39890690-39890754)
chr8 (202-267)||(44648516-44648580)
chr8 (209-266)||(1875582-1875639)
chr8 (227-267)||(34948695-34948735)
[»] chr4 (5 HSPs)
chr4 (209-266)||(34360724-34360781)
chr4 (227-267)||(2158013-2158053)
chr4 (223-267)||(3689630-3689674)
chr4 (227-267)||(7061677-7061717)
chr4 (227-267)||(36985854-36985894)
[»] chr1 (6 HSPs)
chr1 (183-274)||(2981827-2981918)
chr1 (223-261)||(26257946-26257984)
chr1 (209-266)||(12039151-12039208)
chr1 (209-266)||(28749060-28749117)
chr1 (209-266)||(39864180-39864237)
chr1 (227-267)||(31042865-31042905)
[»] chr6 (4 HSPs)
chr6 (205-263)||(1225119-1225177)
chr6 (223-267)||(21804531-21804575)
chr6 (192-263)||(7920310-7920381)
chr6 (233-266)||(181625-181658)
[»] chr2 (4 HSPs)
chr2 (209-267)||(16805949-16806007)
chr2 (209-267)||(16845230-16845288)
chr2 (209-265)||(5789635-5789691)
chr2 (209-262)||(17695403-17695456)
[»] chr7 (7 HSPs)
chr7 (209-266)||(12631381-12631438)
chr7 (228-266)||(34100562-34100600)
chr7 (228-270)||(44180277-44180319)
chr7 (209-266)||(7463289-7463346)
chr7 (223-267)||(22738776-22738820)
chr7 (223-263)||(34947579-34947619)
chr7 (227-267)||(47045468-47045507)
[»] scaffold0159 (1 HSPs)
scaffold0159 (209-265)||(34008-34064)
[»] chr5 (7 HSPs)
chr5 (209-265)||(8698379-8698435)
chr5 (209-263)||(8724996-8725050)
chr5 (209-267)||(15439306-15439364)
chr5 (209-263)||(37184066-37184120)
chr5 (227-263)||(30512690-30512726)
chr5 (227-263)||(30553030-30553066)
chr5 (223-263)||(31655125-31655165)
[»] chr3 (6 HSPs)
chr3 (209-267)||(30190649-30190707)
chr3 (209-266)||(14194624-14194681)
chr3 (209-262)||(33491072-33491125)
chr3 (209-266)||(43253852-43253909)
chr3 (209-277)||(38795402-38795470)
chr3 (227-263)||(42278737-42278773)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 40109930 - 40109799
Alignment:
Q  139 ttttttattttcatataacatattacaacaagggactttattgaatcttattttaatattcgatttagagttgtgcacggtttctaaagaaatgattaat 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40109930 tttttttttttcatataacatattacaacaagggactttattgaatcttattttaatattcgatttagagttgtgcacggtttttaaagaaatgattaat 40109831  T
Q  239 tgaattgatttcaatagtaaaattagtataat 270  Q
    ||||||||||||||||||||||||||||||||    
T  40109830 tgaattgatttcaatagtaaaattagtataat 40109799  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 40110052 - 40109993
Alignment:
Q  18 ataaaaatatcatatttgtctctaccaccaaacgattgtcgaaaccacaaacaccttcatg 78  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40110052 ataaaaatatcatatttgtctctaccaccaa-cgattgtcgaaaccacaaacaccttcatg 40109993  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 39890754 - 39890690
Alignment:
Q  202 tttagagttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||||||| || ||| |||||||||||||| |||| |||| ||||||| |||||||||||    
T  39890754 tttagagttgtgcgcgatttttaaagaaatgattagttgagttgacttcaataataaaattagta 39890690  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 44648516 - 44648580
Alignment:
Q  202 tttagagttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||| |||||||| |||| ||||||||| || | ||||||||||| |||||||||||||    
T  44648516 tttagagttgtacacggtttttaaa-aaatgattagtttagttgatttcaatggtaaaattagtat 44648580  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 1875582 - 1875639
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||  ||| ||||||||||||||  ||||||||||| ||||||||||||    
T  1875582 ttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 1875639  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 34948695 - 34948735
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||||||  ||||||| |||||||||||||||||    
T  34948695 gaaatgattaattgtgttgatttaaatagtaaaattagtat 34948735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 34360781 - 34360724
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||  |||||||||||||||||| |||||||||||| ||||||||||||    
T  34360781 ttgtgcacgattattaaagaaatgattaattgtattgatttcaatggtaaaattagta 34360724  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 2158013 - 2158053
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  2158013 gaaacgattaattgaattgatttcaatgataaaattagtat 2158053  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 3689674 - 3689630
Alignment:
Q  223 taaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    |||||||||||||||||| ||||||||  || |||||||||||||    
T  3689674 taaagaaatgattaattgtattgattttgatggtaaaattagtat 3689630  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 7061677 - 7061717
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  7061677 gaaatgattaattgtgttgatttcaatggtaaaattagtat 7061717  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 36985894 - 36985854
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  36985894 gaaatgattaattgtgttgatttcaatggtaaaattagtat 36985854  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 2981827 - 2981918
Alignment:
Q  183 atcttattttaatattcgatttagagttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagtataatctac 274  Q
    |||| ||||||||| ||| |||||||||||||||  |||  ||  |||| |||| || | ||||||||||||| ||||||||||||||||||    
T  2981827 atctcattttaatagtcgttttagagttgtgcacatttttaaataaaataattagttaagttgatttcaatagaaaaattagtataatctac 2981918  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 26257946 - 26257984
Alignment:
Q  223 taaagaaatgattaattgaattgatttcaatagtaaaat 261  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  26257946 taaagaaatgattaattgtattgatttcaatagcaaaat 26257984  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 12039208 - 12039151
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||  ||| ||||||||||||||  ||||||||||| ||||||||||||    
T  12039208 ttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 12039151  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 28749117 - 28749060
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||  ||| ||||||||||||||  ||||||||||| ||||||||||||    
T  28749117 ttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 28749060  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 39864237 - 39864180
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||  ||| ||||||||||||||  ||||||||||| ||||||||||||    
T  39864237 ttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 39864180  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 31042905 - 31042865
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  31042905 gaaatgattaattgtgttgatttcaatggtaaaattagtat 31042865  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 1225177 - 1225119
Alignment:
Q  205 agagttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    |||||||||||||  || ||||||||||||||||||  ||||||| |||||||||||||    
T  1225177 agagttgtgcacgagttttaaagaaatgattaattgtgttgatttaaatagtaaaatta 1225119  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 21804531 - 21804575
Alignment:
Q  223 taaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||    
T  21804531 taaagaaatgattaattgtattaatttcaattgtaaaattagtat 21804575  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 7920381 - 7920310
Alignment:
Q  192 taatattcgatttagagttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    |||||| || || ||| ||||||||| ||| |||||||||||||||||   ||||||||||| |||||||||    
T  7920381 taatatccgtttaagatttgtgcacgatttttaaagaaatgattaattttgttgatttcaatggtaaaatta 7920310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 181658 - 181625
Alignment:
Q  233 attaattgaattgatttcaatagtaaaattagta 266  Q
    |||||||| |||||||||||||||||||||||||    
T  181658 attaattgtattgatttcaatagtaaaattagta 181625  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 16806007 - 16805949
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||| ||  ||||||||||||||||||  ||||||| |||||||||||||||||    
T  16806007 ttgtgcacgattattaaagaaatgattaattgtgttgattttaatagtaaaattagtat 16805949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 16845288 - 16845230
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||| ||  ||||||||||||||||||  ||||||| |||||||||||||||||    
T  16845288 ttgtgcacgattattaaagaaatgattaattgtgttgattttaatagtaaaattagtat 16845230  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 5789635 - 5789691
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagt 265  Q
    ||||||||| ||  ||| |||||||||||||| ||||| ||||||||||||||||||    
T  5789635 ttgtgcacgattattaaggaaatgattaattgtattgaattcaatagtaaaattagt 5789691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 17695456 - 17695403
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaatt 262  Q
    ||||||||| ||  ||| |||||||||||||| |||||||||||| ||||||||    
T  17695456 ttgtgcacgattattaaggaaatgattaattgtattgatttcaatggtaaaatt 17695403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 12631438 - 12631381
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||  ||| ||||| |||||||| |||||||||||||||||||||||||    
T  12631438 ttgtgcacgattattaaggaaataattaattgtattgatttcaatagtaaaattagta 12631381  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 34100562 - 34100600
Alignment:
Q  228 aaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  34100562 aaatgattaattgtgttgatttcaatagtaaaattagta 34100600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 44180319 - 44180277
Alignment:
Q  228 aaatgattaattgaattgatttcaatagtaaaattagtataat 270  Q
    |||||||||||||  ||||||||||| ||||||||||||||||    
T  44180319 aaatgattaattgtgttgatttcaatggtaaaattagtataat 44180277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 7463346 - 7463289
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||||||  ||| ||||||||||||||  |||||||||||  |||||||||||    
T  7463346 ttgtgcacggttattaaggaaatgattaattgtgttgatttcaatgataaaattagta 7463289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 22738820 - 22738776
Alignment:
Q  223 taaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||||||||||  | ||||||||| |||||||||||||    
T  22738820 taaagaaatgattaattgtgtagatttcaatggtaaaattagtat 22738776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 34947619 - 34947579
Alignment:
Q  223 taaagaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    ||||||||||||||||||  ||||||||||| |||||||||    
T  34947619 taaagaaatgattaattgtgttgatttcaatggtaaaatta 34947579  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 47045468 - 47045507
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  47045468 gaaatgattaattgagttgatttcaat-gtaaaattagtat 47045507  T

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Target: scaffold0159 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 34008 - 34064
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagt 265  Q
    ||||||||| ||  ||| |||||||||||||| ||||| ||||||||||||||||||    
T  34008 ttgtgcacgattattaaggaaatgattaattgtattgaattcaatagtaaaattagt 34064  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 8698435 - 8698379
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagt 265  Q
    ||||||||| ||  ||||||||||||||||||  ||||||||||| |||||||||||    
T  8698435 ttgtgcacgattattaaagaaatgattaattgtgttgatttcaatggtaaaattagt 8698379  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 8724996 - 8725050
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    ||||||||| ||  ||||||||||||||||||  ||||||||||| |||||||||    
T  8724996 ttgtgcacgattattaaagaaatgattaattgtgttgatttcaatggtaaaatta 8725050  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 15439306 - 15439364
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||| | | ||| |||||||||||||| ||| |||||||| |||||||||||||    
T  15439306 ttgtgcacgatatttaaggaaatgattaattgtattaatttcaatggtaaaattagtat 15439364  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 37184066 - 37184120
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    ||||||| | ||| |||| |||||||||||||| ||||||||||| |||||||||    
T  37184066 ttgtgcaagatttttaaaaaaatgattaattgagttgatttcaatggtaaaatta 37184120  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 30512690 - 30512726
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    |||||||||||||| |||||||||||| |||||||||    
T  30512690 gaaatgattaattgtattgatttcaatggtaaaatta 30512726  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 30553030 - 30553066
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    |||||||||||||| |||||||||||| |||||||||    
T  30553030 gaaatgattaattgtattgatttcaatggtaaaatta 30553066  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 31655165 - 31655125
Alignment:
Q  223 taaagaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    ||||||||||||||||||  ||||||||||| |||||||||    
T  31655165 taaagaaatgattaattgtgttgatttcaatggtaaaatta 31655125  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 30190649 - 30190707
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagtat 267  Q
    ||||||||||||   || ||||||||||||||  ||||||||||| |||||||||||||    
T  30190649 ttgtgcacggttatgaaggaaatgattaattgtgttgatttcaatggtaaaattagtat 30190707  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 14194681 - 14194624
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||| |||||||||||| |||||  |||||||||||  |||||||||||    
T  14194681 ttgtgcacgatttttaaagaaatgatcaattgtgttgatttcaatgataaaattagta 14194624  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 33491072 - 33491125
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaatt 262  Q
    ||||||||| ||  ||| ||||||||||||||  ||||||||||||||||||||    
T  33491072 ttgtgcacgattattaaggaaatgattaattgtgttgatttcaatagtaaaatt 33491125  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 43253852 - 43253909
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagta 266  Q
    ||||||||| ||  ||| ||||||||||||||  ||||||||||| ||||||||||||    
T  43253852 ttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 43253909  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 38795470 - 38795402
Alignment:
Q  209 ttgtgcacggtttctaaagaaatgattaattgaattgatttcaatagtaaaattagtataatctaccca 277  Q
    ||||||||| | | ||| ||||||||||||||  || |||||||| ||||||||||||| || ||||||    
T  38795470 ttgtgcacgatatttaaggaaatgattaattgtgtttatttcaatggtaaaattagtatcatttaccca 38795402  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 42278773 - 42278737
Alignment:
Q  227 gaaatgattaattgaattgatttcaatagtaaaatta 263  Q
    |||||||||| |||||||||||||||| |||||||||    
T  42278773 gaaatgattagttgaattgatttcaatcgtaaaatta 42278737  T

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