View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20003_low_64 (Length: 264)
Name: NF20003_low_64
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 45832882 - 45832637
Alignment:
| Q |
1 |
caaaataagttcaaaggctctcataaggagtcaatgattatctttgaaaaagtatccctttatgctaggaccaagtcatcactactcaggttatgtaaat |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45832882 |
caaaataagttcaaaggctgtcataaggaatcaatgataatctttgaaaaagtatcattttatgctaggaccaagccatcactactcaggttatgtaaat |
45832783 |
T |
|
| Q |
101 |
gctttcactacttaggttatgtaaatttatttcactaaagagaaatcacaaataaatctatcctcttttcaattcaccacttatatttcaaatagttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45832782 |
gctttcactacttaggttatgtaaatttatttcactaaagag-aatcacaaataaatctatcctcttttcaattcaccacttatatttcaaataattaaa |
45832684 |
T |
|
| Q |
201 |
ggcaatggagcactctcttttcaattgaatcatactcaagacaaaac |
247 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
45832683 |
ggcaatggagcactctctttttaattgaatcatactcaagataaaac |
45832637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 32552516 - 32552609
Alignment:
| Q |
100 |
tgctttcactacttaggttatgtaaatttatttcactaaagagaaatcacaaataaatctatcctcttttcaattcaccacttatatttcaaatag |
195 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| | ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
32552516 |
tgctttcactactcaggttatgtaaatttgtttcactca-gagaa-tcacaaataaatctaccctcttttcaattcaccacttttatttcaaatag |
32552609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 32756309 - 32756139
Alignment:
| Q |
79 |
tcactactcaggttatgtaaatgctttcactacttaggttatgtaaatttatttcactaaagagaaatcacaaataaatctatcctcttttcaattcacc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
32756309 |
tcactactcaggttatgtaaatgctttcactacttaagttaattaaatttatttcaccca--caaaatcacaaataaatatgccctattttcaattcacc |
32756212 |
T |
|
| Q |
179 |
acttatatttcaa--atagttaaagg---caatggagcactctcttttcaattgaatcatactcaagacaaaa |
246 |
Q |
| |
|
||| ||||| || | || || || |||| | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32756211 |
actcttattttaattacagggaatggattcaattcaccactctcttttcaattgaatcatacttaagacaaaa |
32756139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 32752634 - 32752598
Alignment:
| Q |
211 |
cactctcttttcaattgaatcatactcaagacaaaac |
247 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32752634 |
cactttcttttcaattgaatcatactcaagacaaaac |
32752598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University