View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_66 (Length: 258)
Name: NF20003_low_66
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 1640140 - 1639911
Alignment:
| Q |
14 |
gaacgcttaaaagtaatcaattatttacttaaaaagtaaagattttacttctaa-ctaaataccttaattatttatttgagtctaactgcacactctgtc |
112 |
Q |
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| T |
1640140 |
gaacccttaaaagtaatcaattatttacttaaaaagtaaagatttcacttctaaactaaataccttaattatttatttgagtctaaccgcacactctgtc |
1640041 |
T |
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| Q |
113 |
acttctcaattatacttgtgacttattcatttcaagttggtttttcttatttcttcattttcttcccatgacacctttgatgtttaattactcataggtg |
212 |
Q |
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| T |
1640040 |
acc-ctcaattatacttgtgacttattcatttcaagttggtttttcttatttcttcattttcttcccatgacacctttgatgtttaattactcataggtg |
1639942 |
T |
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| Q |
213 |
caattgcatgatttggattgaaggtagataa |
243 |
Q |
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| T |
1639941 |
caattgcatgatttggattgaaggtagataa |
1639911 |
T |
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