View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_low_7 (Length: 615)

Name: NF20003_low_7
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_low_7
NF20003_low_7
[»] chr6 (2 HSPs)
chr6 (121-601)||(20082322-20082821)
chr6 (18-61)||(20082219-20082262)
[»] chr4 (1 HSPs)
chr4 (410-468)||(54448490-54448550)
[»] scaffold0264 (1 HSPs)
scaffold0264 (18-63)||(21572-21617)
[»] chr1 (1 HSPs)
chr1 (410-461)||(6234031-6234084)
[»] chr5 (1 HSPs)
chr5 (428-485)||(2665654-2665711)
[»] chr7 (2 HSPs)
chr7 (428-468)||(34589371-34589411)
chr7 (428-468)||(45560628-45560668)
[»] chr2 (1 HSPs)
chr2 (428-468)||(34645581-34645621)


Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 121 - 601
Target Start/End: Original strand, 20082322 - 20082821
Alignment:
Q  121 tggttctcaatataacaaaagaaggaaaacttattaaatttaactgagatgtatgaatgcacttgatttgagagtgtttcatcaccataagtcagttgcc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20082322 tggttctcaatataacaaaagaaggaaaacttattaaatttaactgagatgtatgaatgcacttgatttgagagtgtttcatcaccataagtcagttgcc 20082421  T
Q  221 tggtgtagttagaatcaccgcacataacaagatctccgataacccattttaaatgctaagggaacaacgacaacaactctcaattatttgtgagagtaac 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20082422 tggtgtagttagaatcaccgcacataacaagatctccgataacccattttaaatgctaagggaacaacgacaacaactctcaattatttgtgagagtaac 20082521  T
Q  321 actgacattcattgttcgtagatatagcgaaaccggaacatcaacagaataggattgactaggtaatacacaatttgtaa-------------------g 401  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||                   |    
T  20082522 actgacattcattgttcgtagatatagcgaaaccggaatatcaacagtataggattgactaggtaatacacaatttgtaacttgacccagcaactaaatg 20082621  T
Q  402 gattgggcatctcaacccttgcataattttgccacatgtctttcatccataacctaaatggactaaacgaagcatagctgaactttagtcacatgtcaaa 501  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  20082622 gattgggcatctcaacgcttgcataattttgccacgtgtctttcatccataacctaaatggactaaacgaagtatagctgaactttcgtcacacgtcaaa 20082721  T
Q  502 caaaacacaaccatttacagttttatccatcagccatgatatctcatatatctataggaagaaagatgcattttcaatttttctttattactgttctgtg 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  20082722 caaaacacaaccatttacagttttatccatcagccatgatatctcatatatctataggaagaaagacgcattttcagtttttctttattactgttctgtg 20082821  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 20082219 - 20082262
Alignment:
Q  18 accttcagtttcctattgatgcagaaattgtcaagaaaaattgg 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20082219 accttcagtttcctattgatgcagaaattgtcaagaaaaattgg 20082262  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 54448490 - 54448550
Alignment:
Q  410 atctcaacccttgcataat--tttgccacatgtctttcatccataacctaaatggactaaa 468  Q
    ||||||||||||| |||||  ||||||| ||||||||||||||| ||||||||||||||||    
T  54448490 atctcaacccttgaataatgttttgccaaatgtctttcatccatgacctaaatggactaaa 54448550  T

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Target: scaffold0264 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 21572 - 21617
Alignment:
Q  18 accttcagtttcctattgatgcagaaattgtcaagaaaaattggac 63  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||    
T  21572 accttcagtttcctattgatgcaagaattgtcaagaaaaaatggac 21617  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 6234084 - 6234031
Alignment:
Q  410 atctcaacccttgcataat--tttgccacatgtctttcatccataacctaaatg 461  Q
    ||||||||||||| |||||  |||| ||| ||||||||||||||||||||||||    
T  6234084 atctcaacccttgtataatgttttgtcacgtgtctttcatccataacctaaatg 6234031  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 485
Target Start/End: Complemental strand, 2665711 - 2665654
Alignment:
Q  428 ttttgccacatgtctttcatccataacctaaatggactaaacgaagcatagctgaact 485  Q
    |||||||||||||||| |||| | | ||||||||||||||| | |||||| |||||||    
T  2665711 ttttgccacatgtcttccatcaagaccctaaatggactaaatggagcatacctgaact 2665654  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 34589411 - 34589371
Alignment:
Q  428 ttttgccacatgtctttcatccataacctaaatggactaaa 468  Q
    ||||||||||||||||  ||||||| |||||||||||||||    
T  34589411 ttttgccacatgtcttaaatccataccctaaatggactaaa 34589371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 45560628 - 45560668
Alignment:
Q  428 ttttgccacatgtctttcatccataacctaaatggactaaa 468  Q
    |||||||||||||||  ||||||| ||||||||||||||||    
T  45560628 ttttgccacatgtctcgcatccatgacctaaatggactaaa 45560668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 34645621 - 34645581
Alignment:
Q  428 ttttgccacatgtctttcatccataacctaaatggactaaa 468  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  34645621 ttttgccacatgtcttgcatccataccctaaatggagtaaa 34645581  T

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