View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_71 (Length: 250)
Name: NF20003_low_71
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_71 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2601 - 2388
Alignment:
| Q |
1 |
ctgttggatacaaaaacataatgtctagtgaaaaactagtcagtaatagaataacagaaaggaggtgaatgtacaggggccgtcttataagcatgtcata |
100 |
Q |
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| T |
2601 |
ctgttggatacaaaaacataatgtctagtgaaaaactagtcagtaatagaataacagaaaggaggtgaatgtacaggtgccgtcttataagcatgtcata |
2502 |
T |
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| Q |
101 |
taggtgcccaaaatatttactacttaatcatgaaactgaaatttatatttgaacttacaagggtctagttttctacccaaatcttatgtaataaagtaat |
200 |
Q |
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| T |
2501 |
taggtgcccaaaatatttactacttaatcatgaaactgaaatttatatttgaacttacaagggtctagttttctaccgaaatcttatgcaataaagtaat |
2402 |
T |
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| Q |
201 |
gcacataatgaaat |
214 |
Q |
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|||||||||||||| |
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| T |
2401 |
gcacataatgaaat |
2388 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 37873298 - 37873413
Alignment:
| Q |
7 |
gatacaaaaacataatgtctagtgaaaaactagtcagtaatagaataacagaaaggaggtgaatgtacaggggccgtcttataagcatgtcatat-aggt |
105 |
Q |
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| T |
37873298 |
gataccaaaacatgatgtcttgtgaaaat-tagttagttatagaataaccgagaggggatgaatgtacatgtgccatcttataagaaaatcatttcagct |
37873396 |
T |
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| Q |
106 |
gcccaaaatatttacta |
122 |
Q |
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| T |
37873397 |
gcccaaaatatttacta |
37873413 |
T |
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