View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_78 (Length: 243)
Name: NF20003_low_78
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 13356517 - 13356404
Alignment:
| Q |
112 |
agaaaagtatcaaattacaacgtgttgaaaagatacctccttatacatcctggttacatttgattaggtaagtcttactttcaaagtttaaggatctaaa |
211 |
Q |
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| T |
13356517 |
agaaaagtatcaaattacaacgtgttgaaaagatacctccttatacatcctggttacatttgtttaggtaagtctaactttcaaagtttaaggatctaaa |
13356418 |
T |
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| Q |
212 |
aatcctataaaaat |
225 |
Q |
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| T |
13356417 |
aatcctataaaaat |
13356404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13356628 - 13356573
Alignment:
| Q |
1 |
aatgttatttaataacctccttatggagctaattccaatatgagcaggaaaaatgc |
56 |
Q |
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| T |
13356628 |
aatgttatttaataacctccttatagagctaattccaatatgagcaggaaaaatgc |
13356573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 19085569 - 19085653
Alignment:
| Q |
112 |
agaaaagtatcaaattacaacgtgttgaaaagatacctccttatacatcctggttacatttgattaggtaagtcttactttcaaa |
196 |
Q |
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|||||| | ||| |||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||| |
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| T |
19085569 |
agaaaactttcagattacaacgtgttgaaaagatacctcattatacaacatggttacacttgattaggtaagtcttactttcaaa |
19085653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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