View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_low_8 (Length: 581)

Name: NF20003_low_8
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_low_8
NF20003_low_8
[»] chr5 (4 HSPs)
chr5 (244-563)||(41248326-41248646)
chr5 (15-160)||(41248097-41248242)
chr5 (424-469)||(13018747-13018792)
chr5 (340-408)||(5860904-5860971)
[»] chr7 (2 HSPs)
chr7 (340-411)||(27931612-27931683)
chr7 (340-409)||(6737530-6737599)
[»] chr6 (1 HSPs)
chr6 (351-409)||(24667024-24667082)
[»] chr2 (1 HSPs)
chr2 (418-448)||(32766827-32766857)
[»] chr1 (2 HSPs)
chr1 (383-432)||(10589081-10589130)
chr1 (351-408)||(36481143-36481200)
[»] chr4 (1 HSPs)
chr4 (335-387)||(4669579-4669631)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 244 - 563
Target Start/End: Original strand, 41248326 - 41248646
Alignment:
Q  244 ggcgatattttcatttttgaagggcacacacgatgtatttgaaattatgaaaatagatatgcatgaattttaatctatataatggggatataatcgagca 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41248326 ggcgatattttcatttttgaagggcacacacgatgtatttgaaattatgaaaaaagatatgcatgaattttaatctatataatggggatataatcgagca 41248425  T
Q  344 attgtgttcaagtggttaatgagttctactaaagatgaattgttcatgagaacatgagttcgattcatcgacaaaacaattttttaccaaactttactta 443  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  41248426 attgtgtttaagtggttaatgagttccactaaagatgaattgttcatgagaacatgagttcgattcatcgacaaaataattttttatcaaactttactta 41248525  T
Q  444 cctctgagtcgaactctggattatcaggggctctttcccttgagaaccagaatgttaacacac-nnnnnnntataatggggacaagaatttaggagaaag 542  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||    
T  41248526 cctctgagtcgaactttggattatcaggggctctttcccttgagaaccagaatgctaacacacacaaaaaatataatggggacaagaatttaggagaaag 41248625  T
Q  543 aatgtgataaactgaggttta 563  Q
    |||||||||||| ||||||||    
T  41248626 aatgtgataaacagaggttta 41248646  T

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Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 41248097 - 41248242
Alignment:
Q  15 aatatcatttacaagtaaccgtacaaattaatcttattaagatagataaaatttaaagattgacatctttcaataaatatttttcgatatacatcaacct 114  Q
    ||||||||| | |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41248097 aatatcattcataagtaactctacaaattaatcttattgagatagataaaatttaaagattgacatctttcaataaatatttttcgatatacatcaacct 41248196  T
Q  115 taagccaaatgcttaagggttaagcatccatctagaagtgattacc 160  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  41248197 taagccaaatgcttaagggttaagcatctatctagaagtgattacc 41248242  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 13018792 - 13018747
Alignment:
Q  424 tttttaccaaactttacttacctctgagtcgaactctggattatca 469  Q
    |||||| || || |||||||||||| ||||||||||||||||||||    
T  13018792 tttttatcagacgttacttacctctcagtcgaactctggattatca 13018747  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 408
Target Start/End: Complemental strand, 5860971 - 5860904
Alignment:
Q  340 agcaattgtgttcaagtggttaatgagttctactaaagatgaattgttcatgagaacatgagttcgatt 408  Q
    ||||| || ||||||||||| |||||| || ||||| ||||| ||||||| |||||| |||||||||||    
T  5860971 agcaactgggttcaagtggt-aatgagctccactaaggatgagttgttcaggagaacctgagttcgatt 5860904  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 27931612 - 27931683
Alignment:
Q  340 agcaattgtgttcaagtggttaatgagttctactaaagatgaattgttcatgagaacatgagttcgattcat 411  Q
    |||||||||| |||||||||| ||||| || || |||||  | ||||||| |||||| ||||||||||||||    
T  27931612 agcaattgtgctcaagtggtttatgagctccaccaaagaacatttgttcaggagaacttgagttcgattcat 27931683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 6737599 - 6737530
Alignment:
Q  340 agcaattgtgttcaagtggttaatgagttctactaaagatgaattgttcatgagaacatgagttcgattc 409  Q
    |||||||| |||||||||| |||||||||| || ||  | |||||||| | |||||| ||||||||||||    
T  6737599 agcaattgggttcaagtggctaatgagttccaccaagaacgaattgtttaggagaacctgagttcgattc 6737530  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 24667024 - 24667082
Alignment:
Q  351 tcaagtggttaatgagttctactaaagatgaattgttcatgagaacatgagttcgattc 409  Q
    |||||||||||||||||| ||| || || |||||||||| |||||| ||||||| ||||    
T  24667024 tcaagtggttaatgagttttacaaaggacgaattgttcaggagaacctgagttcaattc 24667082  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 32766827 - 32766857
Alignment:
Q  418 aacaattttttaccaaactttacttacctct 448  Q
    |||||||||||||||||||||||||||||||    
T  32766827 aacaattttttaccaaactttacttacctct 32766857  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 10589081 - 10589130
Alignment:
Q  383 ttgttcatgagaacatgagttcgattcatcgacaaaacaattttttacca 432  Q
    ||||||||||||||||||||| |||| || ||| ||||||||||| ||||    
T  10589081 ttgttcatgagaacatgagtttgatttattgaccaaacaatttttgacca 10589130  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 36481143 - 36481200
Alignment:
Q  351 tcaagtggttaatgagttctactaaagatgaattgttcatgagaacatgagttcgatt 408  Q
    |||||||||||||||| |  |  ||||||||||||||| ||| |||||||||||||||    
T  36481143 tcaagtggttaatgagcttcatcaaagatgaattgttcgtgaaaacatgagttcgatt 36481200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 4669579 - 4669631
Alignment:
Q  335 aatcgagcaattgtgttcaagtggttaatgagttctactaaagatgaattgtt 387  Q
    |||| |||||||| ||||||||||||||||||||| || ||  ||||||||||    
T  4669579 aatcaagcaattgggttcaagtggttaatgagttccaccaagaatgaattgtt 4669631  T

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