View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_80 (Length: 240)
Name: NF20003_low_80
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 28556562 - 28556364
Alignment:
| Q |
25 |
ttaaacagtaacctatttaagtttatacacttctacattttggacatacatagtatgtataagctacattctaattatttggtaaaattggcaggaatta |
124 |
Q |
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| T |
28556562 |
ttaaacagtaacctatttaagtttatacacctctacattttggacatacatagtatgcataagctagattctaattatttggtaaaattggcaggaatta |
28556463 |
T |
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| Q |
125 |
ccagaacatcaacgaagtgatgcagttagttcaatggtatatgaagcaaatgcaagagtaagagatcctgtttatggatgtgtgggagccatatcctct |
223 |
Q |
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| T |
28556462 |
ccagaacatcaacgaagtgatgcagttagttcaatggtatatgaagcaaatgcaagagtaagggatcctgtgtatggatgtgtgggagccatatcctct |
28556364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 39792482 - 39792546
Alignment:
| Q |
142 |
tgatgcagttagttcaatggtatatgaagcaaatgcaagagtaagagatcctgtttatggatgtg |
206 |
Q |
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| T |
39792482 |
tgatgcagttagtagcatggtttatgaagccagtgcaaggataagagaccctgtttatggatgtg |
39792546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 26665876 - 26665929
Alignment:
| Q |
166 |
tgaagcaaatgcaagagtaagagatcctgtttatggatgtgtgggagccatatc |
219 |
Q |
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| T |
26665876 |
tgaagcaaatgcaagagtgagagatcctgtttatggatgtgttggagccatatc |
26665929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 32140913 - 32140971
Alignment:
| Q |
161 |
gtatatgaagcaaatgcaagagtaagagatcctgtttatggatgtgtgggagccatatc |
219 |
Q |
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| T |
32140913 |
gtatatgaagcaaatgcaagagtgaaggaccctgtttatggttgtgttggagcaatatc |
32140971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 35919692 - 35919747
Alignment:
| Q |
164 |
tatgaagcaaatgcaagagtaagagatcctgtttatggatgtgtgggagccatatc |
219 |
Q |
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| T |
35919692 |
tatgaagcaaatgcaagagtgagggatccagtttatggctgtgttggagcaatatc |
35919747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 36231982 - 36231942
Alignment:
| Q |
164 |
tatgaagcaaatgcaagagtaagagatcctgtttatggatg |
204 |
Q |
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| T |
36231982 |
tatgaagcaaatgtaagactaagagatccagtttatggatg |
36231942 |
T |
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