View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_87 (Length: 219)
Name: NF20003_low_87
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 4841546 - 4841735
Alignment:
| Q |
16 |
aaggccaaaaagccacagcacaaaccacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaaaacaattac |
115 |
Q |
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| T |
4841546 |
aaggccaaaaaggcacaacacaaaccacctaaacaacccttaata----caatagaatcacagcagaaaaaccttaaccaaatcaagcaaaaacaattgc |
4841641 |
T |
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| Q |
116 |
ttagttgatattggtatgccttgtcgcattgatgtttcagaa------aggtggaggggaatgttgtattatatgtggtaatacaggtggtaat |
203 |
Q |
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| T |
4841642 |
ttagttgatattggtatgccttgtcgcattgatgtttcagaaatgtctaggtggaggggaatgttgtcttatatgtggtaatacaggtggtaat |
4841735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 4834826 - 4834972
Alignment:
| Q |
14 |
caaaggccaaaaagccacagcacaaa-ccacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaa-----a |
107 |
Q |
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| T |
4834826 |
caaaggccaaaaagccacaacacaaaaccacccaaacaacccttaata----caatagaatcacagcagaaaaaccttaaccaaatcaagcaaattaaaa |
4834921 |
T |
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| Q |
108 |
acaattacttagttgatattggtatgccttgtcgcattgatgtttcagaaa |
158 |
Q |
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| T |
4834922 |
acaattacttagttgatatttgtatgccttgtcgcgttgatgtttcagaaa |
4834972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 4871176 - 4871241
Alignment:
| Q |
37 |
aaaccacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaa |
106 |
Q |
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| T |
4871176 |
aaaccacccaaacaacccttaata----caatataatcacagcagaaaaaccttaaccaaatcaagcaaa |
4871241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 4826193 - 4826246
Alignment:
| Q |
105 |
aaaacaattacttagttgatattggtatgccttgtcgcattgatgtttcagaaa |
158 |
Q |
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|||||||||||||||| ||||||| |||| ||||| |||||||||||||||||| |
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| T |
4826193 |
aaaacaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaa |
4826246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 4845601 - 4845651
Alignment:
| Q |
108 |
acaattacttagttgatattggtatgccttgtcgcattgatgtttcagaaa |
158 |
Q |
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||||||||||||| ||||||| |||| ||||| |||||||||||||||||| |
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| T |
4845601 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaa |
4845651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 4871360 - 4871410
Alignment:
| Q |
108 |
acaattacttagttgatattggtatgccttgtcgcattgatgtttcagaaa |
158 |
Q |
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||||||||||||| ||||||| |||| ||||| |||||||||||||||||| |
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| T |
4871360 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaa |
4871410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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