View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_low_89 (Length: 214)
Name: NF20003_low_89
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 4216949 - 4217137
Alignment:
| Q |
18 |
caaagacttctaaacacaagacaactcaaaaatagatgttcgactgtttcatccatcccgcaaccactggaacattgaatatcagttaatggaatactct |
117 |
Q |
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| T |
4216949 |
caaagacttctaaacacaagacaactcaaaaatagatgttcgactgtttcatccatcccgcaaccactcgaacattgaatatcagttaatggaatactct |
4217048 |
T |
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| Q |
118 |
tttccgcaatacattttcttttgtaggaatcctattgtnnnnnnntagcctttaccatgatctagctaccaatcctaagtataatctac |
206 |
Q |
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| T |
4217049 |
tttccgtaatacattttcttttgtaggaatcctattgtaaaaaaatagcctttaccatgatctagctaccaatcctaagtgtaaactac |
4217137 |
T |
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