View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20004_high_8 (Length: 228)
Name: NF20004_high_8
Description: NF20004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20004_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 2326999 - 2326808
Alignment:
| Q |
15 |
catcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaag |
114 |
Q |
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| T |
2326999 |
catcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcac-caaattcgccataatccaatgcaaagcggtggaag |
2326901 |
T |
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| Q |
115 |
tagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactcca |
207 |
Q |
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| T |
2326900 |
tagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttccgtttttccattggcaactccaactcca |
2326808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 2330717 - 2330522
Alignment:
| Q |
12 |
catcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtgg |
111 |
Q |
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| T |
2330717 |
catcatcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcac-caaattcgccataatccattgcaaagcggtgg |
2330619 |
T |
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| Q |
112 |
aagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccat |
208 |
Q |
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| T |
2330618 |
aagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcctgaggcaactccaactccat |
2330522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 2351020 - 2350829
Alignment:
| Q |
15 |
catcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaag |
114 |
Q |
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| T |
2351020 |
catcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcac-caaatttgccataatccattgcaaagccgtggaag |
2350922 |
T |
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| Q |
115 |
tagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactcca |
207 |
Q |
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| T |
2350921 |
tagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactccaactcca |
2350829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 2303445 - 2303255
Alignment:
| Q |
14 |
tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa |
113 |
Q |
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|||||||||||||| ||||||| |||||||| |||||||||||| || || || |||||||| || |||||| ||||||||||| ||||||| |||||| |
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| T |
2303445 |
tcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtactt-aaccaaattcgccataatccattgcaaagtagtggaa |
2303347 |
T |
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| Q |
114 |
gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactc |
205 |
Q |
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| T |
2303346 |
gtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactc |
2303255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 2321146 - 2320956
Alignment:
| Q |
14 |
tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa |
113 |
Q |
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||||||| | |||| ||||| | |||||||| ||||||||||| || || ||||||||||||| |||||| ||||||||||| |||||||| |||||| |
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| T |
2321146 |
tcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcac-caaattcgccataatccactgcaaagcagtggaa |
2321048 |
T |
|
| Q |
114 |
gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactc |
205 |
Q |
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| T |
2321047 |
gtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactc |
2320956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 2293832 - 2293663
Alignment:
| Q |
14 |
tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa |
113 |
Q |
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|||||||||||||| ||||||| |||||||| ||||||||||| || || || |||||||||| | | ||| ||||||||||| |||||| |||||| |
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| T |
2293832 |
tcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcact-acattcgccataatccactgcaaactagtggaa |
2293734 |
T |
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| Q |
114 |
gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgttt |
184 |
Q |
| |
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||||| ||||| ||| | ||||||||||| ||||||||| |||||||||||| |||| ||| |||| |||| |
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| T |
2293733 |
gtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgttt |
2293663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 2310163 - 2309994
Alignment:
| Q |
14 |
tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa |
113 |
Q |
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|||||||||||||| ||||||| |||||||| ||||||||||| | || || |||||||||| || ||| ||||||||||| | |||| |||||| |
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| T |
2310163 |
tcatcaccacccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttcac-cacattcgccataatccactccaaactagtggaa |
2310065 |
T |
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| Q |
114 |
gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgttt |
184 |
Q |
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| T |
2310064 |
gtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgttt |
2309994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 41126919 - 41126832
Alignment:
| Q |
120 |
tctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactcca |
207 |
Q |
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||||| ||||||||||||||||| |||||||| || ||||||||||| ||| ||| ||| |||| ||| ||||||||||| |||| |
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| T |
41126919 |
tctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcctcgggcaactccaattcca |
41126832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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