View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20004_low_2 (Length: 404)
Name: NF20004_low_2
Description: NF20004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20004_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 12926047 - 12925658
Alignment:
| Q |
1 |
aaagtagtgtgaattgaacaactttgaataaatttcctttataaatttgatggaaaatagtaatctctagtggtacatatgagaaaaagataacattata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12926047 |
aaagtagtgtgaattgaacaactttgaataaatttcctttataaatttgatggaaaatagtaatctctagtggtacatatgagaaaaagataacattata |
12925948 |
T |
|
| Q |
101 |
tgtctttttcacacaaaaatatactcaatttcactaagatatttttaatactatatagtctgagttttggtccaagacatactaacatgaaaatttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12925947 |
tgtctttttcacacaaaaatatactcaatttcactaagatatttttaatactatatagtctgagttttggtccaagacatactaacatgaaaatttattg |
12925848 |
T |
|
| Q |
201 |
gattttggatttactgttgtaaaggttacacgcaatttcatgctgtaacaaaatctcatccgttgatttaagattggatgattcaaatttaaactcggtt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12925847 |
gattttggatttactgctgtaaaggttacacgcaatttcacgctgtaacaaaatctcgtccgttgatttaagattggatggttcaaatttaaactcggtt |
12925748 |
T |
|
| Q |
301 |
ttacacagtaaaacaatccagaccatttatttaaatcaggcggctcaccgttgtaagtgtgtgacgcaattacaattgcgtgatggagtt |
390 |
Q |
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| T |
12925747 |
ttacacagtaaaacaatccagaccatttatttaaatcagacggctcaccgttgtaactgtgtgacgcaattacaactgcgtgatgcagtt |
12925658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 348
Target Start/End: Complemental strand, 24598958 - 24598841
Alignment:
| Q |
229 |
cacgcaatttcatgctgtaacaaaatctcatccgttgatttaagattggatgattcaaatttaaactcggttttacacagtaaaacaatccagaccattt |
328 |
Q |
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|||||| ||||| ||||||| ||| || |||||||||||| ||||||||| | ||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
24598958 |
cacgcagtttcacgctgtaataaa-tcccatccgttgattcaagattggacggttcaa-tttatactcggttttacacaataaaacaatccagaccattg |
24598861 |
T |
|
| Q |
329 |
atttaaatcaggcggctcac |
348 |
Q |
| |
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|||| |||| | |||||||| |
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| T |
24598860 |
attttaatccgacggctcac |
24598841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 36303372 - 36303543
Alignment:
| Q |
204 |
tttggatttactgttgtaaaggttacacgcaatttcatgctgtaacaaaatctcatccgttgatttaagattggatgattcaaatttaaactcggtttta |
303 |
Q |
| |
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||||||||||||| |||||| ||||||| || ||||| | ||||||| | |||| | |||||||||| ||| | | |||||||||||||| ||||| |
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| T |
36303372 |
tttggatttactgctgtaaaagttacacacagtttcacgttgtaacaga-tctcgttcgttgatttatgatcatacggttcaaatttaaacttaatttta |
36303470 |
T |
|
| Q |
304 |
cacagtaaaacaatccagaccatttatttaaatcaggcggctcaccgttgtaagtgtgtgacgcaattacaat |
376 |
Q |
| |
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|| | |||||||||| ||||||||||||| |||| | |||||||| ||||| || ||||||||||||||| |
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|
| T |
36303471 |
cataataaaacaatctagaccatttattttaatcggacggctcacaactgtaactgcatgacgcaattacaat |
36303543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 52897346 - 52897277
Alignment:
| Q |
251 |
aaatctcatccgttgatttaagattggatgattcaaatttaaactcggttttacacagtaaaacaatcca |
320 |
Q |
| |
|
|||||||||| |||||||||||||| | | |||| ||||||||||||||||||| | |||||||||||| |
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|
| T |
52897346 |
aaatctcatctattgatttaagattgaacggttcagatttaaactcggttttacagaataaaacaatcca |
52897277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 1819000 - 1818939
Alignment:
| Q |
287 |
atttaaactcggttttacacagtaaaacaatccagaccatttatttaaatcaggcggctcac |
348 |
Q |
| |
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||||||| | ||||||||| || ||||||||| ||||||||||||| |||||| ||||||| |
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| T |
1819000 |
atttaaatttggttttacatagaaaaacaatctagaccatttattttaatcagaaggctcac |
1818939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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