View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20004_low_3 (Length: 376)
Name: NF20004_low_3
Description: NF20004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20004_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 15133812 - 15133463
Alignment:
| Q |
6 |
aatttgtttgttcgctttggagtgttggagtggtgaagcatcaaacgaaaagttgtagaatgtttattggattatttggcatgcaacgatttgactgatt |
105 |
Q |
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| T |
15133812 |
aatttgtttgttcgctt-ggagtgttggagtggtgaagcatcaaacgaaaagttgcggaaggtttattggattatttgacatgcaacgatttgattgatt |
15133714 |
T |
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| Q |
106 |
tggaatactcgtaaaagtcgtatttttaatagtacggttaaagacatggaagaattggtagatgaaattaaggttttgttttagcgttggacattggcgc |
205 |
Q |
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| T |
15133713 |
tggaatactcgtaaaaatcgtatctt-aataatatggttaaagatatggaagaattggtagatgaaattaaggttttgttttggc-ttggacattggcgc |
15133616 |
T |
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| Q |
206 |
gcttgaagtgtccaccttgtttgtattatgagtggtgttggaatcctaaatattgtctcttgaggtgatggagcagttttgggttagnnnnnnnnnnngt |
305 |
Q |
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| T |
15133615 |
gcttgaagtgtccaacttgtttgtattatgagtagtgttggaatcctaaatattgtctcttgaggtgatggagcagttttgggttag----tttatttgt |
15133520 |
T |
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| Q |
306 |
tgtttcggatatgtaataataggttgagtttttggaggtttttgttgtcctttcttgatg |
365 |
Q |
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| T |
15133519 |
tgtttcggatatg---taataggttgagtttttggaggtttttgttgtcttttcttgatg |
15133463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 44164979 - 44165011
Alignment:
| Q |
222 |
ttgtttgtattatgagtggtgttggaatcctaa |
254 |
Q |
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| T |
44164979 |
ttgtttgttttatgagtggtgttggaatcctaa |
44165011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 20161973 - 20162005
Alignment:
| Q |
222 |
ttgtttgtattatgagtggtgttggaatcctaa |
254 |
Q |
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| T |
20161973 |
ttgtttgttttatgagtggtgttggaatcctaa |
20162005 |
T |
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