View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20004_low_4 (Length: 324)

Name: NF20004_low_4
Description: NF20004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20004_low_4
NF20004_low_4
[»] chr1 (9 HSPs)
chr1 (1-145)||(14507248-14507392)
chr1 (5-143)||(14470533-14470672)
chr1 (221-299)||(14470356-14470434)
chr1 (5-191)||(14508682-14508863)
chr1 (100-156)||(14485065-14485121)
chr1 (219-303)||(14508557-14508637)
chr1 (61-117)||(6326689-6326745)
chr1 (62-125)||(12535404-12535467)
chr1 (62-124)||(12540654-12540716)
[»] chr5 (1 HSPs)
chr5 (59-167)||(1717977-1718085)
[»] chr2 (2 HSPs)
chr2 (29-137)||(9068528-9068637)
chr2 (59-172)||(9066376-9066489)
[»] chr3 (1 HSPs)
chr3 (219-301)||(47924648-47924726)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 14507392 - 14507248
Alignment:
Q  1 aaaaatttatattttgaaatgattgtttagaagatcatacatagttgtatcacatgtgtaatctaatctttggctgttgcatcgttggtcaatttgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14507392 aaaaatttatattttgaaatgattgtttagaagatcatacatagttgtatcacatgtgtaatctaatctttggctgttgcatcgttggtcaatttgaaaa 14507293  T
Q  101 agcaattgccttgtttagagaattggtagcatcaaaatacatggt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14507292 agcaattgccttgtttagagaattggtagcatcaaaatacatggt 14507248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 14470672 - 14470533
Alignment:
Q  5 atttatattttgaaatgattgtttagaagatcatacatagttgtatcacatgt-gtaatctaatctttggctgttgcatcgttggtcaatttgaaaaagc 103  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||    
T  14470672 atttatattttgaaatgattgtttagaagatcatacgtagttgtatcacatgtcgtaatctaatctttggttgttgcatcattggtcaatttaaaaaagc 14470573  T
Q  104 aattgccttgtttagagaattggtagcatcaaaatacatg 143  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  14470572 aattgccttgtttagagaattggaagcatcaaaatacatg 14470533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 14470434 - 14470356
Alignment:
Q  221 ctattgttgttagttatcactcggtgattgatcgatgaactatacataggtgaaggaagagttgataagattacacaaa 299  Q
    |||||||||||||||||||||| | ||||||||||||||||||||  |||||||||||||||| |||||||| ||||||    
T  14470434 ctattgttgttagttatcactcagagattgatcgatgaactataccaaggtgaaggaagagttaataagattgcacaaa 14470356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 14508863 - 14508682
Alignment:
Q  5 atttatattttgaaatgattgtttagaagatcatacatagttgtatcacatgtg-taatctaatctttggctgttgcatcgttggtcaatttgaaaaagc 103  Q
    ||||||||| ||||||||||||| |||||||||  | |  |  |||||||| |  ||||||||||| ||| | ||||||||| ||||||||| || ||||    
T  14508863 atttatattctgaaatgattgttaagaagatcaatcctgatgctatcacatatcataatctaatctatggttattgcatcgtcggtcaatttaaacaagc 14508764  T
Q  104 aattgccttgtttagagaattggtagcatcaaaatacatggttccaaatgtttttgttcctactttagtttccgaaggagaggtgaaa 191  Q
    |||||||||||||||| ||||||  ||      |||||||| ||||| ||||| ||||| ||| |||||| | |||||||||||||||    
T  14508763 aattgccttgtttagaaaattggaggc------atacatggatccaagtgtttatgttcttacgttagttactgaaggagaggtgaaa 14508682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 14485121 - 14485065
Alignment:
Q  100 aagcaattgccttgtttagagaattggtagcatcaaaatacatggttccaaatgttt 156  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  14485121 aagcaattgccttgtttagagaattggaagcatcaaaatacatggatccaagtgttt 14485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 14508637 - 14508557
Alignment:
Q  219 acctattgttgttagttatcactcggtgattgatcgatgaactatacataggtgaaggaagagttgataagattacacaaatggt 303  Q
    ||||||||||| ||||| ||||||||||||||||    |||||||||| ||| |||||| |||||||||||||| || |||||||    
T  14508637 acctattgttgctagttttcactcggtgattgat----gaactatacaaaggagaaggacgagttgataagattgcataaatggt 14508557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  61 atctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgttta 117  Q
    ||||||||| ||||| ||||||| | |||||||||||| ||||||||||||||||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 12535467 - 12535404
Alignment:
Q  62 tctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaattg 125  Q
    |||||||| ||||| |||||||   ||||||||| || ||||||||||| ||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaattgccatgtttagagaattg 12535404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 12540654 - 12540716
Alignment:
Q  62 tctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaatt 124  Q
    |||| ||| ||||| |||||||  |||||||||| |  |||||||||||||||||||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatt 12540716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 1717977 - 1718085
Alignment:
Q  59 taatctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaattggtagcatcaaaatacatggttccaaatgttttt 158  Q
    ||||||||||| ||| | ||||||||||||||||||| || |||||||||||||||||||| ||||||  |||| ||||||||||| ||||| ||||| |    
T  1717977 taatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatggatccaagtgtttat 1718076  T
Q  159 gttcctact 167  Q
    |||||||||    
T  1718077 gttcctact 1718085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 9068528 - 9068637
Alignment:
Q  29 agaagatcatacatagttgtatcacatgtg-taatctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaattggt 127  Q
    |||||||||| | ||||||||||| || |  ||||||||||| ||||| ||||||||||||||||||| || |||   |||||||||||||||||||||     
T  9068528 agaagatcatgcgtagttgtatcatatatcataatctaatctatggctattgcatcgttggtcaatttaaacaagttgttgccttgtttagagaattgga 9068627  T
Q  128 agcatcaaaa 137  Q
    ||||| ||||    
T  9068628 agcataaaaa 9068637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 9066376 - 9066489
Alignment:
Q  59 taatctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaattggtagcatcaaaatacatggttccaaatgttttt 158  Q
    ||||||||||| ||| | ||| ||||| ||||||||| ||  |||||||||||||||||||||||| |  |||| ||||| ||||| | ||| ||||  |    
T  9066376 taatctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttagagaattagaggcattaaaatgcatggattcaagtgttaat 9066475  T
Q  159 gttcctactttagt 172  Q
    ||||||||||||||    
T  9066476 gttcctactttagt 9066489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 47924726 - 47924648
Alignment:
Q  219 acctattgttgttagttatcactcggtgattgatcgatgaactatacataggtgaaggaagagttgataagattacacaaatg 301  Q
    ||||| |||||  ||||||||||| ||||||||||    ||||||||| |||||| |||| |||| |||||||| ||||||||    
T  47924726 acctaatgttgccagttatcactcagtgattgatc----aactatacagaggtgatggaaaagttaataagattgcacaaatg 47924648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University