View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20004_low_5 (Length: 290)
Name: NF20004_low_5
Description: NF20004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20004_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 14507400 - 14507678
Alignment:
| Q |
1 |
tttgattcgagttattgagcgatactgagttatgagcttgaattcaaccgagttccagctgnnnnnnngttggcggcgagctcgagtttagtatcaagct |
100 |
Q |
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| T |
14507400 |
tttgattcgagttattgagtgatactgagttatgagcttgaattcaaccgagttccagctgaaaaaaagttggcggcgaactcgagtttagtatcaagct |
14507499 |
T |
|
| Q |
101 |
gagcttgaatgtgcaaagtttgactcagctcgacttatctcctggtctactttagttcgatcatttaattaacccttttatacttgttggacgtctatca |
200 |
Q |
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| T |
14507500 |
gagcttggatgtgcaaagtttgactcagctcgacttatctcctggtctactttagttagatcatttaattaacccttttatacttgttggacgtctatca |
14507599 |
T |
|
| Q |
201 |
gcaaagtgaactaatgggaaaacggacaaggattttccgatgtcaaggaaatcctacagttatgaaatcgtctgttcat |
279 |
Q |
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| T |
14507600 |
gcaaagtgaactaatgggaaaacggacaaggattttccgatgtcaaggaaatcctacagttatgaaattgtctgttcat |
14507678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 14477910 - 14478023
Alignment:
| Q |
160 |
atcatttaattaacccttttatacttgttggacgtctatcagcaaagtgaacta--atgggaaaacggacaaggattttccgatgtcaaggaaatcctac |
257 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
14477910 |
atcatttaattaacccttttatacttgttgg---tctatcagaaaagtgaactataatgggaaaagggacaaggattttccgatgtcaaggtaatcctac |
14478006 |
T |
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| Q |
258 |
agttatgaaatcgtctg |
274 |
Q |
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| T |
14478007 |
agttatgaaatcgtctg |
14478023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 9068353 - 9068232
Alignment:
| Q |
144 |
ggtctactttagttcgatcatttaattaacccttttatacttgttggacgtctatcagcaaagtgaactaatgggaaaacggacaaggattttccgatgt |
243 |
Q |
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|||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||| |||| |||||||||||||||| ||| |
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| T |
9068353 |
ggtctactttggttagatcattcaattaacccttttatacttgttga---tctatcagcaaggtgaactgatggcaaaagggacaaggattttccgttgt |
9068257 |
T |
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| Q |
244 |
caaggaaatcctacagttatgaaat |
268 |
Q |
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|||||||||| | |||||||||||| |
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| T |
9068256 |
caaggaaatcttgcagttatgaaat |
9068232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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