View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20004_low_7 (Length: 237)
Name: NF20004_low_7
Description: NF20004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20004_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 29021008 - 29020805
Alignment:
| Q |
16 |
gagagaaagcagtctaaaatatttcaaatacattgaacaaaatatacattagnnnnnnnnnnnnnnnatcacttttaaaatatacaaagttaacct-tct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| || ||| |
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| T |
29021008 |
gagagaaagcagtctaaaatatttcaaatacattgaacaaaatatatattagtttttttttctt---atcacttttaaaatatacaaggttaatctgtct |
29020912 |
T |
|
| Q |
115 |
tggactaaggcaccatcttcaccctaaagttttgttataaaaaa--cgtaaatactagggaatgccatgtcgaaaagtaattcaaccatatagttagaat |
212 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29020911 |
tggactaagacaccatcttcaccctaaagttttgtaataaaaaaaacgtaaatactagggaatgccatgtcgaaaagtaattcaaccatatagttagaat |
29020812 |
T |
|
| Q |
213 |
ggtaact |
219 |
Q |
| |
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||||||| |
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| T |
29020811 |
ggtaact |
29020805 |
T |
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