View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20004_low_9 (Length: 233)
Name: NF20004_low_9
Description: NF20004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20004_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 35937385 - 35937171
Alignment:
| Q |
19 |
ataatgctttgaataagtgctgcaaaaattaaaaccaagtattattgttgttcataaaaacgatcattgnnnnnnnnagggaaaaaacaatcattgttgt |
118 |
Q |
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| T |
35937385 |
ataatgctttgaataagtgctgcaaaaattaaaactaagtattattgttgttcttaaaaacgatcattgttttttttagggaaaaaacaatcattgttgt |
35937286 |
T |
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| Q |
119 |
tatccattatttataatccctcttttactgttttgtaaattaatatatagattttttatgaggagtggttacgtttccatccactaatttggtcgcgttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35937285 |
tatccattatttataatccctcttttactgttttgtaaattaatatatagattttttatgaggagtggttacgtttccatccactaatttggtcgcgttg |
35937186 |
T |
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| Q |
219 |
gtttggaaattaagt |
233 |
Q |
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||||||||||||||| |
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| T |
35937185 |
gtttggaaattaagt |
35937171 |
T |
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