View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20005_high_1 (Length: 359)
Name: NF20005_high_1
Description: NF20005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20005_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 44555636 - 44555306
Alignment:
| Q |
8 |
aattatttaacatatgttttgtccttgtgaatgaacagtgtgatgaaagcatggatgcagtagaaaaatatctgaatgataagaaaattggttgtaaacg |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44555636 |
aattaattaacatatgttttgtccttgtgaatgaacagtgtgatgaaagcatggatacagtagaaaaatatctgaatgataagaaaattggctgtaaacg |
44555537 |
T |
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| Q |
108 |
tgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgtt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44555536 |
tgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtcttcctgtt |
44555437 |
T |
|
| Q |
208 |
attcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacagatacatcaagttgtaaagcaaatttgatcatgat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44555436 |
attcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacagatacaccaagttgtaaagcaaatttgatcatgat |
44555337 |
T |
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| Q |
308 |
gaggccaagcttcttattttatcttaatttt |
338 |
Q |
| |
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| T |
44555336 |
gaggccaagcttcttattttatcttaatttt |
44555306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 38 - 338
Target Start/End: Complemental strand, 44544964 - 44544664
Alignment:
| Q |
38 |
atgaacagtgtgatgaaagcatggatgcagtagaaaaatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagt |
137 |
Q |
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||||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| |
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| T |
44544964 |
atgaacagtgtgatggaagcattgatgcagtagagaaatatctgaatgataaaaaaattgtttgtaagcgtgcattggtggaagaaaatggaattcaagt |
44544865 |
T |
|
| Q |
138 |
ggatcaattgttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatca |
237 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| || |||| ||| |
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| T |
44544864 |
ggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtctcccagttattcctctagctggtgagattgttaattca |
44544765 |
T |
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| Q |
238 |
tgctctagactcaaccttgagattatgccacaacagatacatcaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttatcttaattt |
337 |
Q |
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||||||||| |||||||||||| |||||||||| ||||||| ||| |||| | |||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
44544764 |
tgctctagaatcaaccttgagactatgccacaaaagatacaccaacctgtagaaaaaatttaaacatgatgaggccaaacttcttattttatcttaattt |
44544665 |
T |
|
| Q |
338 |
t |
338 |
Q |
| |
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| |
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| T |
44544664 |
t |
44544664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 375982 - 376047
Alignment:
| Q |
126 |
tggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatatgcaattg |
191 |
Q |
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||||||| | || ||||||||||| |||||||| |||||||||| ||||||||||| |||||||| |
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| T |
375982 |
tggaattaaggttgatcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
376047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 43 - 338
Target Start/End: Original strand, 51845888 - 51846187
Alignment:
| Q |
43 |
cagtgtgatgaaagcatggatgcagtagaaaaatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatc |
142 |
Q |
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||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |
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| T |
51845888 |
cagtgtgatgaaagcatggatgcagtagagaaatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatc |
51845987 |
T |
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| Q |
143 |
aattgttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctc |
242 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||| || |||| | |
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| T |
51845988 |
agttgttttttcatgacccagatggattcatgattgagatatgcaattgtgatagtctccctgttattcctttagctggtgggatggttacattatgccc |
51846087 |
T |
|
| Q |
243 |
tagactcaaccttgagattatgccacaacagatacatcaagttgtaaagcaaatttgatcat----gatgaggccaagcttcttattttatcttaatttt |
338 |
Q |
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|||||||||| ||||| |||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51846088 |
tagactcaactttgagtctatgccacaacagatagaccaagttgcaaagcaaatttgatcatgctcgatgaggccaagcttcttattttatcttaatttt |
51846187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 2573272 - 2573366
Alignment:
| Q |
148 |
ttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctc |
242 |
Q |
| |
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||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| | | ||||||||||| |
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| T |
2573272 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgctc |
2573366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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