View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20005_high_3 (Length: 254)

Name: NF20005_high_3
Description: NF20005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20005_high_3
NF20005_high_3
[»] chr3 (1 HSPs)
chr3 (19-240)||(9168337-9168558)
[»] chr1 (9 HSPs)
chr1 (48-236)||(9306840-9307031)
chr1 (45-243)||(9475290-9475491)
chr1 (96-243)||(8924746-8924893)
chr1 (80-239)||(8959889-8960051)
chr1 (75-239)||(8936363-8936530)
chr1 (96-243)||(8945881-8946028)
chr1 (98-243)||(9335524-9335669)
chr1 (133-240)||(9245056-9245163)
chr1 (53-240)||(9359214-9359404)
[»] chr6 (1 HSPs)
chr6 (48-242)||(15912782-15912979)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 9168337 - 9168558
Alignment:
Q  19 tatggatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168337 tatggatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccag 9168436  T
Q  119 gatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168437 gatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataa 9168536  T
Q  219 ctcgtacctcggatcaccacag 240  Q
    ||||||||||||||||||||||    
T  9168537 ctcgtacctcggatcaccacag 9168558  T

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Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 9307031 - 9306840
Alignment:
Q  48 gtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagttt 144  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||| |   |||||||||||||  |||||| ||||||||||||| |||| |||||||    
T  9307031 gtaagaacttgtgaaattggctgcggttaagaaatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagttt 9306932  T
Q  145 ttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcacc 236  Q
     |||||||||||||||||||||||||||||||  |||||| | ||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  9306931 ctgtagttgattgatttcacatagtatttacctgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcacc 9306840  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 9475491 - 9475290
Alignment:
Q  45 actgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtag 141  Q
    ||||||||||||||||||||||| |  |||||||||||| |||||||||| |   |||||| | ||||  |||||||||||||||| |||||||||||||    
T  9475491 actgtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtag 9475392  T
Q  142 tttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacagg 241  Q
    || | |||||||||||| ||||||| ||| |||||| ||| || | ||| |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  9475391 ttatcgtagttgattgacttcacattgtagttacccgaaagcaaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacagg 9475292  T
Q  242 tt 243  Q
    ||    
T  9475291 tt 9475290  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 8924746 - 8924893
Alignment:
Q  96 gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgtt 195  Q
    ||||||||| ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | | || ||| |||  |||    
T  8924746 gcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactcgacaatagagttaaagtt 8924845  T
Q  196 gtgatgttgttttcacaggataactcgtacctcggatcaccacaggtt 243  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||    
T  8924846 gttatgttgttttcgcaggataactcgtacctcggatcaccacaggtt 8924893  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 8959889 - 8960051
Alignment:
Q  80 aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttacc 176  Q
    ||||| |||||||||||   |||||||| ||||| ||||| ||||||||||  |  ||||||||||| ||||||||||||||||||||||||||||||||    
T  8959889 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8959988  T
Q  177 ccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccaca 239  Q
    | | |||| | |||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8959989 cgacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccaca 8960051  T

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Target: chr1; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 8936363 - 8936530
Alignment:
Q  75 taagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtat 171  Q
    |||| ||||| |||||||||||   |||||||| ||||| ||||| ||||||||||  |  ||||||||||| |||||||||||||||||||||||||||    
T  8936363 taagtaatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtat 8936462  T
Q  172 ttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccaca 239  Q
    |||||| | |||||| ||| | |||||||||||||||| ||||||||||| ||||| |||||||||||    
T  8936463 ttacccgacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccaca 8936530  T

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Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 8945881 - 8946028
Alignment:
Q  96 gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgtt 195  Q
    |||||||||||||| |||||||||||||||||  |  ||||||||||| ||||||||||||||||| |||| |||||||||  ||| |||  ||| | ||    
T  8945881 gcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaacatt 8945980  T
Q  196 gtgatgttgttttcacaggataactcgtacctcggatcaccacaggtt 243  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  8945981 gtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggtt 8946028  T

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Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 9335524 - 9335669
Alignment:
Q  98 aatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgt 197  Q
    ||||||||||||| ||||| ||||||||||  |  |||||||||||| |||||||||||   | |||||||||||||||  |||||||| ||| || |||    
T  9335524 aatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacctgaaaacagagttaacgctgt 9335623  T
Q  198 gatgttgttttcacaggataactcgtacctcggatcaccacaggtt 243  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||    
T  9335624 gatgttgttttcgcaggataactcgtactttggatcaccacaggtt 9335669  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 9245163 - 9245056
Alignment:
Q  133 attgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggat 232  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||| |||||||| ||| |  ||||||||||||||| ||||||||||| ||| ||||||    
T  9245163 attgtgtagttgttgtagttgattgccttcacatagtacttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggat 9245064  T
Q  233 caccacag 240  Q
    ||||||||    
T  9245063 caccacag 9245056  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 9359214 - 9359404
Alignment:
Q  53 aacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgta 149  Q
    ||||||||||||||| |   |||||||||||  ||||||||| |   |||| ||| ||||| ||| | ||||||||||  |  |||||||| |||  |||    
T  9359214 aacttgtgaaattggatttagttaagaaatatggaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgta 9359313  T
Q  150 gttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacag 240  Q
    |||||||   | |||||||||||||||  |||||||| ||| |   |||||||||||||| ||||||||||||||| ||||||||||||||    
T  9359314 gttgatttcctgcacatagtatttacctgaaaacagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacag 9359404  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 242
Target Start/End: Complemental strand, 15912979 - 15912782
Alignment:
Q  48 gtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagttt 144  Q
    |||| |||||| ||| |||| || ||||||||| || |||||||||| |   |||||||| ||||  |  || | ||||||||  || ||||||||||||    
T  15912979 gtaaaaacttgagaagttggatgtggttaagaagtaacgaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagttt 15912880  T
Q  145 ttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacaggt 242  Q
    || |||||||||     ||||||||| |||||  |||||||| |||  ||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  15912879 ttatagttgatttccaacacatagtacttacctgaaaacagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggt 15912782  T

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