View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20005_low_3 (Length: 306)
Name: NF20005_low_3
Description: NF20005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20005_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 48 - 286
Target Start/End: Original strand, 6697147 - 6697386
Alignment:
| Q |
48 |
caaacacattcaagtatcaaattttgagttagagatataacaatattgtgatgtcatcgatttcaaactatatatgctgatcaattatgagtgtaagatc |
147 |
Q |
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| T |
6697147 |
caaacacattcaagtattaaattttgagttagagatataacaatattgtgatgtcatcgatttcaaactatatatgctgatcaattatgagtgtaagatc |
6697246 |
T |
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| Q |
148 |
aattatattcatcatttcatttgcagttgtgctcaagaacaacctcatgtggttccnnnnnnnnnnnnnggttacaccatgtggttccttaaaccatcat |
247 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6697247 |
aattgtattcatcatttcatttgcagttgtgctcaagaacaacctcatgtggttccttttttgttttttggttacaccatgtggttccttaaaccatcat |
6697346 |
T |
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| Q |
248 |
gatactggtc-tggccttgcatcgaagtatatcattaatg |
286 |
Q |
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| T |
6697347 |
gatactggtcatggccttgcatcgaagtatatcattaatg |
6697386 |
T |
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