View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20005_low_6 (Length: 241)
Name: NF20005_low_6
Description: NF20005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20005_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 47713044 - 47712866
Alignment:
| Q |
50 |
attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta |
149 |
Q |
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| T |
47713044 |
attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta |
47712945 |
T |
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| Q |
150 |
ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgctcct |
228 |
Q |
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| T |
47712944 |
ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgatcct |
47712866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 47745636 - 47745479
Alignment:
| Q |
50 |
attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta |
149 |
Q |
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| T |
47745636 |
attttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagttt |
47745537 |
T |
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| Q |
150 |
ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
207 |
Q |
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| T |
47745536 |
tttttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa |
47745479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 47759959 - 47759802
Alignment:
| Q |
50 |
attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta |
149 |
Q |
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| T |
47759959 |
attttcaaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttg |
47759860 |
T |
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| Q |
150 |
ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
207 |
Q |
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||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
47759859 |
ttgtaataacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaa |
47759802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 47717847 - 47717684
Alignment:
| Q |
50 |
attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta |
149 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||| |
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| T |
47717847 |
attttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctattta |
47717748 |
T |
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| Q |
150 |
ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctat |
213 |
Q |
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| T |
47717747 |
ttttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat |
47717684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
| Q |
155 |
ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
207 |
Q |
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| T |
47704941 |
ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa |
47704889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
| Q |
54 |
tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc |
95 |
Q |
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| T |
47811738 |
tcaaacaataaatggtcttgttcagtgtacacctgatttgtc |
47811779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
| Q |
55 |
caaaccatatatggtcttgtgcagtgtacacctgatttgtc |
95 |
Q |
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| T |
6521987 |
caaaccatatatggtcttgttcaatgcacacctgatttgtc |
6522027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
| Q |
162 |
gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
207 |
Q |
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| T |
28830976 |
gattggtgctagagttatgaaaccaagttgtaatattagatatgaa |
28830931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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