View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20005_low_7 (Length: 228)

Name: NF20005_low_7
Description: NF20005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20005_low_7
NF20005_low_7
[»] chr3 (1 HSPs)
chr3 (19-214)||(9168337-9168532)
[»] chr1 (8 HSPs)
chr1 (48-214)||(9306862-9307031)
chr1 (45-207)||(9475326-9475491)
chr1 (75-214)||(8936363-8936505)
chr1 (96-214)||(8924746-8924864)
chr1 (80-214)||(8959889-8960026)
chr1 (96-214)||(8945881-8945999)
chr1 (98-214)||(9335524-9335640)
chr1 (133-214)||(9245082-9245163)
[»] chr6 (1 HSPs)
chr6 (48-214)||(15912810-15912979)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 9168337 - 9168532
Alignment:
Q  19 tatggatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168337 tatggatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccag 9168436  T
Q  119 gatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacagg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168437 gatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacagg 9168532  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 9307031 - 9306862
Alignment:
Q  48 gtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagttt 144  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||| |   |||||||||||||  |||||| ||||||||||||| |||| |||||||    
T  9307031 gtaagaacttgtgaaattggctgcggttaagaaatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagttt 9306932  T
Q  145 ttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacagg 214  Q
     |||||||||||||||||||||||||||||||  |||||| | ||| |||||||||||||||||| ||||    
T  9306931 ctgtagttgattgatttcacatagtatttacctgaaaacaaagttaacgttgtgatgttgttttcgcagg 9306862  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 9475491 - 9475326
Alignment:
Q  45 actgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtag 141  Q
    ||||||||||||||||||||||| |  |||||||||||| |||||||||| |   |||||| | ||||  |||||||||||||||| |||||||||||||    
T  9475491 actgtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtag 9475392  T
Q  142 tttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttt 207  Q
    || | |||||||||||| ||||||| ||| |||||| ||| || | ||| ||||||||||||||||    
T  9475391 ttatcgtagttgattgacttcacattgtagttacccgaaagcaaagttaacgttgtgatgttgttt 9475326  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 8936363 - 8936505
Alignment:
Q  75 taagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtat 171  Q
    |||| ||||| |||||||||||   |||||||| ||||| ||||| ||||||||||  |  ||||||||||| |||||||||||||||||||||||||||    
T  8936363 taagtaatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtat 8936462  T
Q  172 ttaccccaaaacagacttagcgttgtgatgttgttttcacagg 214  Q
    |||||| | |||||| ||| | |||||||||||||||| ||||    
T  8936463 ttacccgacaacagagttaacattgtgatgttgttttcgcagg 8936505  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 8924746 - 8924864
Alignment:
Q  96 gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgtt 195  Q
    ||||||||| ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | | || ||| |||  |||    
T  8924746 gcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactcgacaatagagttaaagtt 8924845  T
Q  196 gtgatgttgttttcacagg 214  Q
    || ||||||||||| ||||    
T  8924846 gttatgttgttttcgcagg 8924864  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 8959889 - 8960026
Alignment:
Q  80 aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttacc 176  Q
    ||||| |||||||||||   |||||||| ||||| ||||| ||||||||||  |  ||||||||||| ||||||||||||||||||||||||||||||||    
T  8959889 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8959988  T
Q  177 ccaaaacagacttagcgttgtgatgttgttttcacagg 214  Q
    | | |||| | |||  ||||||||||||||||| ||||    
T  8959989 cgacaacaaagttaaggttgtgatgttgttttcgcagg 8960026  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 8945881 - 8945999
Alignment:
Q  96 gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgtt 195  Q
    |||||||||||||| |||||||||||||||||  |  ||||||||||| ||||||||||||||||| |||| |||||||||  ||| |||  ||| | ||    
T  8945881 gcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaacatt 8945980  T
Q  196 gtgatgttgttttcacagg 214  Q
    |||||||| ||||| ||||    
T  8945981 gtgatgtttttttcgcagg 8945999  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 9335524 - 9335640
Alignment:
Q  98 aatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgt 197  Q
    ||||||||||||| ||||| ||||||||||  |  |||||||||||| |||||||||||   | |||||||||||||||  |||||||| ||| || |||    
T  9335524 aatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacctgaaaacagagttaacgctgt 9335623  T
Q  198 gatgttgttttcacagg 214  Q
    |||||||||||| ||||    
T  9335624 gatgttgttttcgcagg 9335640  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 9245163 - 9245082
Alignment:
Q  133 attgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacagg 214  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||| |||||||| ||| |  ||||||||||||||| ||||    
T  9245163 attgtgtagttgttgtagttgattgccttcacatagtacttacccgaaaacagagttaacactgtgatgttgttttcgcagg 9245082  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 15912979 - 15912810
Alignment:
Q  48 gtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagttt 144  Q
    |||| |||||| ||| |||| || ||||||||| || |||||||||| |   |||||||| ||||  |  || | ||||||||  || ||||||||||||    
T  15912979 gtaaaaacttgagaagttggatgtggttaagaagtaacgaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagttt 15912880  T
Q  145 ttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacagg 214  Q
    || |||||||||     ||||||||| |||||  |||||||| |||  ||||||||||||||||| ||||    
T  15912879 ttatagttgatttccaacacatagtacttacctgaaaacagatttaaggttgtgatgttgttttcgcagg 15912810  T

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