View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20006_high_1 (Length: 421)
Name: NF20006_high_1
Description: NF20006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20006_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 35211491 - 35211881
Alignment:
| Q |
18 |
tgtttaaagggttaccttgtcaacatccatatgactggcaagagcagaaccagcagttggaccaaaaccagacacaacatttagaactccaggtggaaga |
117 |
Q |
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| T |
35211491 |
tgtttaaagggttaccttgtcaacatccatatgactggcaagagcagaaccagcagttggaccaaaaccagacacaacatttagaactccaggtggaaga |
35211590 |
T |
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| Q |
118 |
ccagcctgacacaaaacaagcattttagatagacaacaatgtacaatccaatgcagtatcttaattagtgttcttcaatttggatcaatatacatcgaat |
217 |
Q |
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| T |
35211591 |
ccagcctgacacaaaacaagcattttagatagacaacaatgtacaatccaatgcagcatcttaattagtgttcttcaatttggatctatatacatcgaat |
35211690 |
T |
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| Q |
218 |
tatgactacctcttgaaatagctgtgctgcaaataaaccagttaaaggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcagga |
317 |
Q |
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| T |
35211691 |
tatgactacctcttgaaatagctgtgctgcaaataaaccagttaaaggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcagga |
35211790 |
T |
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| Q |
318 |
ccaactttccaagcaaacaacaatataggaaagttccaaggtatgatttgtcctgcaaccccaattggttcatgcaatacttgtacatgat |
408 |
Q |
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| T |
35211791 |
ccaactttccaagcaaacaacaatataggaaagttccaaggtatgatttgtcctgcaaccccaattggttcatgcaatacttgtacatgat |
35211881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 395
Target Start/End: Original strand, 43999617 - 43999748
Alignment:
| Q |
264 |
ggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaacaatataggaaagttccaaggtatga |
363 |
Q |
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| T |
43999617 |
ggtgtttgctcagcagtcttgaggacaatggtattaccacatgctagagctggtccaactttccaagcaaacataagtagaggaaaattccaaggtataa |
43999716 |
T |
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| Q |
364 |
tttgtcctgcaaccccaattggttcatgcaat |
395 |
Q |
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| T |
43999717 |
tttgtcctgctacaccaattggttcatgcaat |
43999748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 26895333 - 26895274
Alignment:
| Q |
30 |
taccttgtcaacatccatatgactggcaagagcagaaccagcagttggaccaaaaccaga |
89 |
Q |
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| T |
26895333 |
taccttatcaacatccatgtgactagcaagagcagcacctgcagttggaccaaagccaga |
26895274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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