View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20006_high_6 (Length: 205)

Name: NF20006_high_6
Description: NF20006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20006_high_6
NF20006_high_6
[»] chr6 (3 HSPs)
chr6 (1-205)||(8331144-8331347)
chr6 (89-205)||(8342269-8342385)
chr6 (91-205)||(8337822-8337936)
[»] scaffold0595 (1 HSPs)
scaffold0595 (89-205)||(6559-6675)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8331347 - 8331144
Alignment:
Q  1 aagtgtctctaaacaatacatctaaaaacttttaatgtaatttcaattattcaaataaagcatcaaagannnnnnnctaaggaaaaatacaaacctcgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||    
T  8331347 aagtgtctctaaacaatacatctaaaaacttttaatgtaatttcaattattcaaataaagcatcaaagatttttt-ctaaggaaaaatacaaaccttgtt 8331249  T
Q  101 agaggggtctagagaagtgtgtttgcggctatatttggttcctcttgtattagtaacccatacatcaaagccattttcagcaagaatcataggcaggttt 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8331248 agaggggtctagggaagtgtgtttgcggctatatttggttcctcttgtattagtaacccatacatcaaagccattgtcagcaagaatcataggcaggttt 8331149  T
Q  201 tgctt 205  Q
    |||||    
T  8331148 tgctt 8331144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 8342385 - 8342269
Alignment:
Q  89 acaaacctcgttagaggggtctagagaagtgtgtttgcggctatatttggttcctcttgtattagtaacccatacatcaaagccattttcagcaagaatc 188  Q
    |||||||| ||||||||||||||| || || |||||||| ||| ||||||||||||||||||||| || |||||||||||||||||| | ||||||||||    
T  8342385 acaaaccttgttagaggggtctagggaggtatgtttgcgactaaatttggttcctcttgtattaggaatccatacatcaaagccattattagcaagaatc 8342286  T
Q  189 ataggcaggttttgctt 205  Q
    ||||| |||||||||||    
T  8342285 ataggaaggttttgctt 8342269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 8337936 - 8337822
Alignment:
Q  91 aaacctcgttagaggggtctagagaagtgtgtttgcggctatatttggttcctcttgtattagtaacccatacatcaaagccattttcagcaagaatcat 190  Q
    |||||| | |||||| |||||| ||||| |||||||||||| ||||||||||||| || |||| || |||||||||||||||||| ||||||||||||||    
T  8337936 aaaccttgctagaggagtctagggaagtatgtttgcggctaaatttggttcctctggtgttaggaatccatacatcaaagccattatcagcaagaatcat 8337837  T
Q  191 aggcaggttttgctt 205  Q
    |||||||||||||||    
T  8337836 aggcaggttttgctt 8337822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 6675 - 6559
Alignment:
Q  89 acaaacctcgttagaggggtctagagaagtgtgtttgcggctatatttggttcctcttgtattagtaacccatacatcaaagccattttcagcaagaatc 188  Q
    |||||||| ||||||||||||||| || || |||||||| ||| ||||||||||||||||||||| || |||||||||||||||||| | ||||||||||    
T  6675 acaaaccttgttagaggggtctagggaggtatgtttgcgactaaatttggttcctcttgtattaggaatccatacatcaaagccattattagcaagaatc 6576  T
Q  189 ataggcaggttttgctt 205  Q
    ||||| |||||||||||    
T  6575 ataggaaggttttgctt 6559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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