View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20006_low_1 (Length: 468)
Name: NF20006_low_1
Description: NF20006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20006_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 50 - 449
Target Start/End: Original strand, 41895998 - 41896397
Alignment:
| Q |
50 |
taacaaaaaatattatcattaatcctgatcttgctacagcacaaaataatttccctcaatctgcttctcaaaaccctaagatccatcaaggacaagatct |
149 |
Q |
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| T |
41895998 |
taacaaaaaatattatcattaatcctgatcttgctacaacacaaaataatttccctcaatctgcttctcaaaaccctaagatccatcaaggacaagatct |
41896097 |
T |
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| Q |
150 |
taacctagcttatccaccacaaacaactgaggataattataacaccatatctaaattcattgagcttccttacacaactgatcatcaagacaaaactaca |
249 |
Q |
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| T |
41896098 |
taacctagcttatccaccacaaacaactgaggataattataacaccatatctaaattcattgagcttccttacacaactgatcatcaagacaaaactaca |
41896197 |
T |
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| Q |
250 |
agtgctatggagcttctgaaaactgcttcttcatcaaggggtttgaattcttttatgcctatgactttgtctgagtctagtgcaatgtataattcaagtg |
349 |
Q |
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| T |
41896198 |
agtgctatggagcttctgaaaactgcttcttcatcaaggggtttgaattcttttatgcctatgactttgtctgagtctagtgcaatgtataattcaagtg |
41896297 |
T |
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| Q |
350 |
gctttgctttgcaagattttaagcttggggtcaattttggcttagaagggtttgagaatggttatggtggtttacaagggattaataatcaagagggttc |
449 |
Q |
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| T |
41896298 |
gctttgctttgcaagattttaagcttggggtcaattttggcttagaagggtttgagaatggttatggtggtttacaagggattaataatcaagagggttc |
41896397 |
T |
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